Intestinal organoids as advanced modeling platforms to study the role of host-microbiome interaction in homeostasis and disease

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참고문헌 (90)

1. Ley RE, "Ecological and evolutionary forces shaping microbial diversity in the human intestine", Cell, 124, pp.837~848 (2006)
2. Lynch JB, "Microbiomes as sources of emergent host phenotypes", Science, 365, pp.1405~1408 (2019)
3. Nishida A, "Gut microbiota in the pathogenesis of inflammatory bowel disease", Clin J Gastroenterol, 11, pp.1~10 (2018)
4. Baumler AJ, "Interactions between the microbiota and pathogenic bacteria in the gut", Nature, 535, pp.85~93 (2016)
5. Park EM, "Targeting the gut and tumor microbiota in cancer", Nat Med, 28, pp.690~703 (2022)
6. Nguyen TLA, "How informative is the mouse for human gut microbiota research?", Dis Model Mech, 8, pp.1~16 (2015)
7. Kim J, "Human organoids : model systems for human biology and medicine", Nat Rev Mol Cell Biol, 21, pp.571~584 (2020)
8. Sato T, "Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche", Nature, 459, pp.262~265 (2009)
9. Menche Constantin, "Strategies for genetic manipulation of adult stem cell-derived organoids", Experimental and Molecular Medicine, 53, pp.1~12 (2021), 생화학분자생물학회[DOI]
10. 민성진, "Gastrointestinal tract modeling using organoids engineered with cellular and microbiota niches", Experimental and Molecular Medicine, 52, pp.1~11 (2020), 생화학분자생물학회[DOI]
11. Leslie JL, "Persistence and toxin production by Clostridium difficile within human intestinal organoids result in disruption of epithelial paracellular barrier function", Infect Immun, 83, pp.138~145 (2015)
12. Zhang Y, "Microinjection as a tool of mechanical delivery", Curr Opin Biotechnol, 19, pp.506~510 (2008)
13. Poletti M, "Organoid-based models to study the role of host-microbiota Interactions in IBD", J Crohns Colitis, 15, pp.1222~1235 (2021)
14. Ginga NJ, "Perfusion system for modification of luminal contents of human intestinal organoids and realtime imaging analysis of microbial populations", Micromachines(Basel), 13, pp.131~ (2022)
15. Puschhof J, "Intestinal organoid cocultures with microbes", Nat Protoc, 16, pp.4633~4649 (2021)
16. Williamson IA, "A high-throughput organoid microinjection platform to study gastrointestinal microbiota and luminal physiology", Cell Mol Gastroenterol Hepatol, 6, pp.301~319 (2018)
17. Chen Y, "Heat killed Salmonella typhimurium protects intestine against radiation injury through wnt signaling pathway", J Oncol, 2021, pp.5550956~ (2021)
18. Fischer S, "Human peptide alpha-defensin-1 interferes with Clostridioides difficile toxins TcdA, TcdB, and CDT", FASEB J, 34, pp.6244~6261 (2020)
19. Liu R, "Constitutive STAT5 activation regulates Paneth and Paneth-like cells to control Clostridium difficile colitis", Life Sci Alliance, 2, pp.e201900296~ (2019)
20. Huang J, "Effect of Listeria monocytogenes on intestinal stem cells in the coculture model of small intestinal organoids", Microb Pathog, 153, pp.104776~ (2021)
21. Iftekhar A, "Genomic aberrations after short-term exposure to colibactin-producing E. coli transform primary colon epithelial cells", Nat Commun, 12, pp.1003~ (2021)
22. Sato T, "Long-term expansion of epithelial organoids from human colon, adenoma, adenocarcinoma, and Barrett’s epithelium", Gastroenterology, 141, pp.1762~1772 (2011)
23. Thorne CA, "Enteroid monolayers reveal an autonomous WNT and BMP circuit controlling intestinal epithelial growth and organization", Dev Cell, 44, pp.624~633 (2018)
24. Nickerson KP, "A versatile human intestinal organoid-derived epithelial monolayer model for the study of enteric pathogens", Microbiol Spectr, 9, pp.e0000321~ (2021)
25. Zhang J, "Coculture of primary human colon monolayer with human gut bacteria", Nat Protoc, 16, pp.3874~3900 (2021)
26. Nossol C, "Air-liquid interface cultures enhance the oxygen supply and trigger the structural and functional differentiation of intestinal porcine epithelial cells(IPEC)", Histochem Cell Biol, 136, pp.103~115 (2011)
27. Sachs N, "Long-term expanding human airway organoids for disease modeling", EMBO J, 38, pp.e100300~ (2019)
28. Kim R, "An in vitro intestinal platform with a self-sustaining oxygen gradient to study the human gut", microbiome interface, 2019, pp.12, 015006~
29. Sasaki N, "Development of a scalable coculture system for gut anaerobes and human colon epithelium", Gastroenterology, 159, pp.388~390 (2020)
30. Co JY, "Controlling epithelial polarity : a human enteroid model for host-pathogen interactions", Cell Rep, 26, pp.2509~2520 (2019)
31. Troeger C, "Estimates of the global, regional, and national morbidity, mortality, and aetiologies of diarrhoea in 195 countries : a systematic analysis for the Global Burden of Disease Study 2016", Lancet Infect Dis, 18, pp.1211~1228 (2018)
32. Hazen TH, "Characterization of a large antibiotic resistance plasmid found in enteropathogenic escherichia coli strain B171 and its relatedness to plasmids of diverse E. coli and shigella strains", Antimicrob Agents Chemother, 61, pp.e00995~17 (2017)
33. Livio S, "Shigella isolates from the global enteric multicenter study inform vaccine development", Clin Infect Dis, 59, pp.933~941 (2014)
34. Llanos-Chea A, "Bacteriophage therapy testing against shigella flexneri in a novel human intestinal organoid-derived infection model", J Pediatr Gastroenterol Nutr, 68, pp.509~516 (2019)
35. Ranganathan S, "Evaluating shigella flexneri pathogenesis in the human enteroid model", Infect Immun, 87, pp.e00740-18~ (2019)
36. Koestler BJ, "Human intestinal enteroids as a model system of shigella pathogenesis", Infect Immun, 87, pp.e00733-18~ (2019)
37. Jajere SM, "A review of Salmonella enterica with particular focus on the pathogenicity and virulence factors, host specificity and antimicrobial resistance including multidrug resistance", Vet World, 12, pp.504~521 (2019)
38. Zhang YG, "Salmonellainfected crypt-derived intestinal organoid culture system for host-bacterial interactions", Physiol Rep, 2, pp.e12147~ (2014)
39. Geiser P, "Salmonella enterica serovar typhimurium exploits cycling through epithelial cells to colonize human and murine enteroids", mBio, 12, pp.e02684-20~ (2021)
40. Forbester JL, "Interaction of Salmonella enterica serovar typhimurium with intestinal organoids derived from human induced pluripotent stem cells", Infect Immun, 83, pp.2926~2934 (2015)
41. Lawrence AE, "Salmonella enterica serovar typhimurium SPI-1 and SPI-2 shape the global transcriptional landscape in a human intestinal organoid model system", mBio, 12, pp.e00399-21~ (2021)
42. Verma S, "The YrbE phospholipid transporter of Salmonella enterica serovar Typhi regulates the expression of flagellin and influences motility, adhesion and induction of epithelial inflammatory responses", Gut Microbes, 11, pp.526~538 (2020)
43. Blount ZD, "The unexhausted potential of E. coli", Elife, 4, pp.e05826~ (2015)
44. Kaper JB, "Pathogenic Escherichia coli", Nat Rev Microbiol, 2, pp.123~140 (2004)
45. Takeda Y, "Enterohaemorrhagic Escherichia coli", World Health Stat Q, 50, pp.74~80 (1997)
46. In J, "Enterohemorrhagic Escherichia coli reduce mucus and intermicrovillar bridges in human stem cell-derived colonoids", Cell Mol Gastroenterol Hepatol, 2, pp.48~62 (2016)
47. Tse CM, "Enterohemorrhagic E. coli (EHEC)-secreted serine protease EspP stimulates electrogenic ion transport in human colonoid monolayers", Toxins (Basel), 10, pp.351~ (2018)
48. Kotloff KL, "Burden and aetiology of diarrhoeal disease in infants and young children in developing countries(the Global Enteric Multicenter Study, GEMS) : a prospective, case-control study", Lancet, 382, pp.209~222 (2013)
49. Evans DJ Jr, "Three characteristics associated with enterotoxigenic Escherichia coli isolated from man", Infect Immun, 8, pp.322~328 (1973)
50. Foulke-Abel J, "Phosphodiesterase 5(PDE5)restricts intracellular cGMP accumulation during enterotoxigenic Escherichia coli infection", Gut Microbes, 12, pp.1752125~ (2020)
51. Vermeire B, "Porcine small intestinal organoids as a model to explore ETEC-host interactions in the gut", Vet Res, 52, pp.94~ (2021)
52. Dejea CM, "Patients with familial adenomatous polyposis harbor colonic biofilms containing tumorigenic bacteria", Science, 359, pp.592~597 (2018)
53. Escobar-Paramo P, "Identification of forces shaping the commensal Escherichia coli genetic structure by comparing animal and human isolates", Environ Microbiol, 8, pp.1975~1984 (2006)
54. Pleguezuelos-Manzano C, "Mutational signature in colorectal cancer caused by genotoxic pks(+)E. coli", Nature, 580, pp.269~273 (2020)
55. Chandrasekaran R, "The role of toxins in Clostridium difficile infection", FEMS Microbiol Rev, 41, pp.723~750 (2017)
56. Engevik MA, "Human Clostridium difficile infection : inhibition of NHE3and microbiota profile", Am J Physiol Gastrointest Liver Physiol, 308, pp.G497~ (2015)
57. Mileto SJ, "Clostridioides difficile infection damages colonic stem cells via TcdB, impairing epithelial repair and recovery from disease", Proc Natl Acad Sci U S A, 117, pp.8064~8073 (2020)
58. Engevik MA, "Human intestinal enteroids as a model of Clostridioides difficile-induced enteritis", Am J Physiol Gastrointest Liver Physiol, 318, pp.G870~ (2020)
59. di Masi A, "Human serum albumin is an essential component of the host defense mechanism against clostridium difficile intoxication", J Infect Dis, 218, pp.1424~1435 (2018)
60. Zhu Z, "The antibiotic bacitracin protects human intestinal epithelial cells and stem cell-derived intestinal organoids from clostridium difficile toxin TcdB", Stem Cells Int, 2019, pp.4149762~ (2019)
61. Sigman M, "Cholera : something old, something new", Surg Infect(Larchmt), 13, pp.216~222 (2012)
62. Foulke-Abel J, "Human enteroids as a model of upper small intestinal ion transport physiology and pathophysiology", Gastroenterology, 150, pp.638~649 (2016)
63. Zomer-van Ommen DD, "Functional characterization of cholera toxin inhibitors using human intestinal organoids", J Med Chem, 59, pp.6968~6972 (2016)
64. Kuhlmann FM, "Blood group O-dependent cellular responses to cholera toxin : parallel clinical and epidemiological links to severe cholera", Am J Trop Med Hyg, 95, pp.440~443 (2016)
65. Radoshevich L, "Listeria monocytogenes : towards a complete picture of its physiology and pathogenesis", Nat Rev Microbiol, 16, pp.32~46 (2018)
66. Zhou C, "Expansion of intestinal secretory cell population induced by listeria monocytogenes infection : accompanied with the inhibition of NOTCH pathway", Front Cell Infect Microbiol, 12, pp.793335~ (2022)
67. Zhou C, "Involvement of CCN1 protein and TLR2", 4 signaling pathways in intestinal epithelial cells response to listeria monocytogenes, 2022, pp.23, 2739~
68. Kim M, "Live imaging reveals listeria hijacking of E-cadherin recycling as it crosses the intestinal barrier", Curr Biol, 31, pp.1037~1047 (2021)
69. Zhou C, "TMT-based quantitative proteomic analysis of intestinal organoids infected by listeria monocytogenes strains with different virulence", Int J Mol Sci, 23, pp.6231~ (2022)
70. Wu N, "Dysbiosis signature of fecal microbiota in colorectal cancer patients", Microb Ecol, 66, pp.462~470 (2013)
71. Phongsisay V, "The immunobiology of Campylobacter jejuni : innate immunity and autoimmune diseases", Immunobiology, 221, pp.535~543 (2016)
72. He Z, "Campylobacter jejuni promotes colorectal tumorigenesis through the action of cytolethal distending toxin", Gut, 68, pp.289~300 (2019)
73. Shang FM, "Fusobacterium nucleatum and colorectal cancer : a review", World J Gastrointest Oncol, 10, pp.71~81 (2018)
74. Engevik MA, "Fusobacterium nucleatum secretes outer membrane vesicles and promotes intestinal inflammation", mBio, 12, pp.e02706-20~ (2021)
75. 서유진, "Implication of Porphyromonas gingivalis in colitis and homeostasis of intestinal epithelium", Laboratory Animal Research, 35(4), pp.187~193 (2019), 한국실험동물학회[DOI]
76. Khan R, "Commensal bacteria : an emerging player in defense against respiratory pathogens", Front Immunol, 10, pp.1203~ (2019)
77. Lordan C, "Potential for enriching next-generation health-promoting gut bacteria through prebiotics and other dietary components", Gut Microbes, 11, pp.1~20 (2020)
78. Park NY, "From the dish to the real world : modeling interactions between the gut and microorganisms in gut organoids by tailoring the gut milieu", Int J Stem Cells, 15, pp.70~84 (2022)
79. Wu H, "Lactobacillus reuteri maintains intestinal epithelial regeneration and repairs damaged intestinal mucosa", Gut Microbes, 11, pp.997~1014 (2020)
80. Hou QH, "Lactobacillus accelerates ISCs regeneration to protect the integrity of intestinal mucosa through activation of STAT3 signaling pathway induced by LPLs secretion of IL-22", Cell Death Differ, 25, pp.1657~1670 (2018)
81. Engevik MA, "Immunomodulation of dendritic cells by Lactobacillus reuteri surface components and metabolites", Physiol Rep, 9, pp.e14719~ (2021)
82. Aoki-Yoshida A, "Lactobacillus rhamnosus GG increases Toll-like receptor 3 gene expression in murine small intestine ex vivo and in vivo", Benef Microbes, 7, pp.421~429 (2016)
83. Han X, "Lactobacillus rhamnosus GG prevents epithelial barrier dysfunction induced by interferon-gamma and fecal supernatants from irritable bowel syndrome patients in human intestinal enteroids and colonoids", Gut Microbes, 10, pp.59~76 (2019)
84. Lu X, "Lactobacillus protects against S. typhimurium-induced intestinal inflammation by determining the fate of epithelial proliferation and differentiation", Mol Nutr Food Res, 64, pp.e1900655~ (2020)
85. Sittipo P, "Irradiationinduced intestinal damage is recovered by the indigenous gut bacteria lactobacillus acidophilus", Front Cell Infect Microbiol, 10, pp.415~ (2020)
86. Pino A, "Characterization of Bifidobacterium asteroides Isolates", Microorganisms, 10, pp.655~ (2022)
87. Pradhan S, "Probiotic properties of escherichia coli nissle in human intestinal organoids", mBio, 11, pp.e01470-20~ (2020)
88. Hill DR, "Bacterial colonization stimulates a complex physiological response in the immature human intestinal epithelium", Elife, 6, pp.e29132~ (2017)
89. Kim J, "Human organoids : model systems for human biology and medicine", Nat Rev Mol Cell Biol, 21, pp.571~584 (2020)
90. Lee JY, "The microbiome and gut homeostasis", Science, 377, pp.eabp9960~ (2022)

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