사례연구: 16S ribosomal RNA 유전자의 초가변영역(V1-V4)을 활용한 미생물 동정 사례

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참고문헌 (35)

1. NM Green, "The clinical microbiologist’s molecular tool box : an everexpanding resource for bacterial identification in the laboratory", Clinic Microbiol Newsletter, 32(20), pp.151~159 (2010)
2. 고관수, "미동정 균주의 염기서열 분석을 이용한 동정, 워크샵: 감염질환의 분자생물학적 진단", Infect Chemo, 40(2), pp.S121~S124 (2008)
3. B Yang, "Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis", BMC Bioinformatics, 17, pp.1~8 (2016)
4. L Cai, "Biased Diversity Metrics Revealed by Bacterial 16S Pyrotags Derived from Different Primer Sets", PLOS ONE, 8(1), pp.e53649~ (2013)
5. F Guo, "Taxonomic Precision of Different Hypervariable Regions of 16S rRNA Gene and Annotation Methods for Functional Bacterial Groups in Biological Wastewater Treatment", PLOS ONE, 8(10), pp.e76185~ (2013)
6. Y Guo, "Identification of Forensically Important Sarcophagid Flies (Diptera:Sarcophagidae) in China, Based on COI and 16S rDNA Gene Sequences", J Forensic Sci, 56(6), pp.1536~1540 (2011)
7. KL Theresa, "DNA sequencing by Microseq kit for species level identification of mycobacteria", Indian J Med Res, 129, pp.176~181 (2007)
8. PCY Woo, "Usefulness of the MicroSeq 500 16S ribosomal DNA-based bacterial identification system for identification of clinically significant bacterial isolates with ambiguous biochemical profiles", J Clinic Microbiol, 41(5), pp.1996~2001 (2003)
9. M Arosio, "Evaluation of the Microseq 500 16S rDNA-based gene sequencing for the diagnosis of culture-negative bacteria meningitis", New Microbiol, 31, pp.343~349 (2008)
10. C Fontana, "Use of the MicroSEQ 500 16S rRNA gene-based sequencing for identification of bacterial isolates that commercial automated systems failed to identify correctly", J Clinic Microbiol, 43(2), pp.615~619 (2005)
11. Z Liu, "Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers", Nucleic Acids Research, 36(18), pp.e120~ (2008)
12. JL Cloud, "Identification of Mycobacterium spp. by using a commercial 16S rDNA sequencing kit and additional sequencing libraries", J Clinic Microbiol, 40(2), pp.400~406 (2002)
13. NH Youssef, "Assessing the global phylum level diversity within the bacterial domain: A Review", J Adv Res (2014)[DOI]
14. NJ Fredriksson, "The choice of PCR primers has great impact on assessments of bacterial community diversity and dynamics in a wastewater treatment plant", PLOS ONE, 8(10), pp.e76431~ (2013)
15. N Chaudhary, "16S Classifier: A Tool for Fast and Accurate Taxonomic Classification of 16S rRNA Hypervariable Regions in Metagenomic Datasets", PLOS ONE, 10(1), pp.e0116106~ (2015)
16. J Zhang, "Evaluation of different 16S rRNA gene V regions for exploring bacterial diversity in a eutrophic freshwater lake", STOTEN, 618, pp.1254~1267 (2018)
17. PS Kumar, "Target Region Selection Is a Critical Determinant of Community Fingerprints Generated by 16S Pyrosequencing", PLOS ONE, 6(6), pp.e20956~ (2011)
18. S Vasileiadis, "Soil Bacterial Diversity Screening Using Single 16S rRNA Gene V Regions Coupled with Multi-Million Read Generating Sequencing Technologies", PLOS ONE, 7(8), pp.e42671~ (2012)
19. S Graspeuntner, "Selection of validated hypervariable regions is crucial in 16S-based microbiota studies of the female genital tract", Nature, 8, pp.9678~ (2018)
20. MISHRA ANSHUMAN, "Comparative evaluation of 16S rRNA gene in world-wide strains of Streptococcus iniae and Streptococcus parauberis for early diagnostic marker", Genes & Genomics, 39(7), pp.779~791 (2017), 한국유전학회[DOI]
21. JC Ibal, "Information about variations in multiple copies of bacterial 16S rRNA genes may aid in species identification", PLOS ONE, 14(2), pp.e0212090~ (2019)
22. JP Galkiewicz, "Cross-Kingdom amplification using bacteria-specific primers:complications for studies of coral microbial ecology", App & Environ Microbiol, 74(24), pp.7828~7831 (2008)
23. YZ Lu, "Design and evaluation of universal 16S rRNA gene primers for high-throughput sequencing to simultaneously detect DAMO microes and anammox bacteria", Water research, 87, pp.385~394 (2015)
24. CW Nossa, "Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome", World J Gastroenterol, 16(32), pp.4135~4144 (2010)
25. Mauro Scarpellini, "Development of PCR assay to identify Pseudomonas fluorescens and its biotype", FEMS Microbiol Letters, 236, pp.257~260 (2004)
26. K. Tamura, "MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood distance, and maximum parsimony methods", Mol Biol Evol, 28(10), pp.2731~2739 (2011)
28. SH Yoon, "Introducing EzBioCloud : A taxonomically united database of 16S rRNA and whole genome assemblies", Int J Syst Evol Microbiol, 67, pp.1613~1617 (2017)
30. NKD Ragupathi, "Accurate differentiation of Escherichia coli and Shigella serogroups : challenges and strategies", New Microbes & New Infections, 21, pp.58~62 (2018)
31. PD Khot, "And Escherichia coli by MALDI-TOF MS", J Clin Microbiol, 51(11), pp.3711~3716 (2013)
32. M Fukushima, "Shigella and Escherichia coli strains on the basis of the gyrB gene sequence", J Clin Microbiol, 40(8), pp.2779~2785 (2002)
33. S Paradis, "Phylogeny of the Enterobacteriaceae based on genes encoding elongation factor Tu and FATPase b-subunit", Int J Syst Evol Microbiol, 55, pp.2013~2025 (2005)
34. K Boye, "Sequencing of 16S rDNA of Klebsiella : taxonomic relations within the genus and to other Enterobacteriaceae", Int J Med Microbiol, 292, pp.495~503 (2003)
35. V Tadav, "Identification of Comamonas species using 16S rRNA gene sequence", Bioinfo, 3(9), pp.387~383 (2009)

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