본문 바로가기
KERD
논문KCI 등재

Aptamer-based optical switch for biosensors

조은정|조정환|이주운
한국분석과학회|2014.06|분석과학 (Analytical Science & Technology)|제27권 제3호|pp. 121-139|DOI http://dx.doi.org/10.5806/AST.2014.27.3.121

1

조회

0

다운로드

0

인용

0

참고문헌

키워드

sensorfluorescenceopticalaptamer
주제분류화학

초록

In this review, we will discuss aptamer technologies including in vitro selection, signal transductionmechanisms, and designing aptamers and aptazyme for label-free biosensors and catalysts. Dye-displacement,a typical label-less method, is described here which allows avoiding relatively complex labeling steps andextending this application to any aptamers without specific conformational changes, in a more simple, sensitiveand cost effective way. We will also describe most recent and advanced technologies of signaling aptamerand aptazyme for the various analytical and clinical applications. Quantum dot biosensor (QDB) is explainedin detail covering designing and adaptations for multiplexed protein detection. Application to aptamer arrayutilizing self-assembled signaling aptamer DNA tile and the novel methods that can directly select smart aptameror aptazyme experimentally and computationally will also be finally discussed, respectively.

Abstract

In this review, we will discuss aptamer technologies including in vitro selection, signal transductionmechanisms, and designing aptamers and aptazyme for label-free biosensors and catalysts. Dye-displacement,a typical label-less method, is described here which allows avoiding relatively complex labeling steps andextending this application to any aptamers without specific conformational changes, in a more simple, sensitiveand cost effective way. We will also describe most recent and advanced technologies of signaling aptamerand aptazyme for the various analytical and clinical applications. Quantum dot biosensor (QDB) is explainedin detail covering designing and adaptations for multiplexed protein detection. Application to aptamer arrayutilizing self-assembled signaling aptamer DNA tile and the novel methods that can directly select smart aptameror aptazyme experimentally and computationally will also be finally discussed, respectively.

참고문헌 (91)

  1. D. Proske, , Appl. Microbiol. Biotechnol., 69(4), pp.367~374 (2005)
  2. D. H. Bunka, , Nat. Rev. Microbiol., 4(8), pp.588~596 (2006)
  3. A. C. Yan, , Front. Biosci, 10, pp.1802~1827 (2005)
  4. J. F. Lee, , Curr. Opin. Chem. Biol., 10(3), pp.282~289 (2006)
  5. X. Fang, , Chembiochem, 4(9), pp.829~834 (2003)
  6. R. Nutiu, , Methods, 37(1), pp.16~25 (2005)
  7. R. L. Nutiu, , Eur. J., 10(8), pp.1868~1876 (2004)
  8. Z. Tang, , J Am Chem Soc, 130(34), pp.11268~11269 (2008)
  9. J. J. Li, , Biochem. Biophys. Res. Commun., 292(1), pp.31~40 (2002)
  10. M. N. Stojanovic, , J. Am. Chem. Soc., 122(46), pp.11547~11548 (2000)
  11. R. Nutiu, , J. Am. Chem. Soc, 125(16), pp.4771~4778 (2003)
  12. E. J. Merino, , J. Am. Chem. Soc., 125(41), pp.12370~12371 (2003)
  13. C. J. Yang, , Proc Natl Acad Sci USA, 102(48), pp.17278~17283 (2005)
  14. E. Heyduk, , Anal Chem, 77(4), pp.1147~1156 (2005)
  15. E. Katilius, , Anal. Chem., 78(18), pp.6484~6489 (2006)
  16. R. D. Jenison, , Science, 263(5152), pp.1425~1429 (1994)
  17. S. Seetharaman, , Nat. Biotechnol., 19(4), pp.336~341 (2001)
  18. R. R. Breaker, , Trends Biotechnol, 12(7), pp.268~275 (1994)
  19. R. R. Breaker, , Chem. Rev., 97(2), pp.371~390 (1997)
  20. A. Ferguson, , Nucleic Acids Res., 32(5), pp.1756~1766 (2004)
  21. R. Nutiu, , Angew. Chem. Int. Ed. Engl., 44(34), pp.5464~5467 (2005)
  22. J. Bunkenborg, , Bioconjug. Chem., 11(6), pp.861~867 (2000)
  23. A. N. Glazer, , Nature, 359(6398), pp.859~861 (1992)
  24. S. Laib, , J. Fluoresc., 14(2), pp.187~191 (2004)
  25. Y. Liu, , Anal. Chem., 77(8), pp.2450~2454 (2005)
  26. M. N. Stojanovic, , J. Am. Chem. Soc., 124(33), pp.9678~9679 (2002)
  27. M. N. Stojanovic, , J. Am. Chem. Soc., 126(30), pp.9266~9670 (2004)
  28. J. R. Babendure, , J. Am. Chem. Soc., 125(48), pp.14716~14717 (2003)
  29. D. Grate, , Proc. Natl. Acad. Sci. U S A, 96(11), pp.6131~6136 (1999)
  30. H. A. Ho, , J. Am. Chem. Soc., 126(5), pp.1384~1387 (2004)
  31. I. L. Medintz, , Nat. Mater., 2(9), pp.630~638 (2003)
  32. P. S. Nelson, , Ann. N Y Acad. Sci., 975, pp.232~246 (2002)
  33. S. E. Lupold, , Cancer Res., 62(14), pp.4029~4033 (2002)
  34. O. C. Farokhzad, , Cancer Res., 64(21), pp.7668~7672 (2004)
  35. T. C. Chu, , Biosens. Bioelectron., 21(10), pp.1859~1866 (2006)
  36. J. K. Herr, , Anal. Chem., 78(9), pp.2918~2924 (2006)
  37. J. Srinivasan, , Chem. Biol., 11(4), pp.499~508 (2004)
  38. N. H. Elowe, , Angew. Chem. Int. Ed. Engl., 45(34), pp.5648~5652 (2006)
  39. J. Barletta, , Mol. Aspects. Med., 27(2-3), pp.224~253 (2006)
  40. M. J. Espy, , Clin. Microbiol. Rev., 19(1), pp.165~256 (2006)
  41. P. M. Lizardi, , Nat. Genet., 19(3), pp.225~232 (1998)
  42. H. Zhou, , Genome Biol, 5(4), pp.R28~ (2004)
  43. G. Nallur, , Nucleic Acids Res., 29(23), pp.E118~ (2001)
  44. G. A. Blab, , Anal. Chem., 76(2), pp.495~498 (2004)
  45. M. Nilsson, , Nucleic Acids Res., 30(14), pp.e66~ (2002)
  46. B. Schweitzer, , Proc. Natl. Acad. Sci. USA, 97(18), pp.10113~10119 (2000)
  47. B. Schweitzer, , Nat. Biotechnol., 20(4), pp.359~365 (2002)
  48. D. A. Di Giusto, , Nucleic Acids Res., 33(6), pp.e64~ (2005)
  49. J. J. Harvey, , Anal. Biochem, 333(2), pp.246~255 (2004)
  50. I. V. Smolina, , Anal. Biochem., 335(2), pp.326~329 (2004)
  51. M. P. Robertson, , Nat. Biotechnol., 17(1), pp.62~66 (1999)
  52. M. Levy, , Chem. Biol., 9(4), pp.417~426 (2002)
  53. M. Levy, , J. Mol. Evol., 54(2), pp.180~190 (2002)
  54. M. Levy, , Bioorg. Med. Chem., 9(10), pp.2581~2587 (2001)
  55. Y. Xu, , Nucleic Acids Res, 27(3), pp.875~881 (1999)
  56. O. Soderberg, , Nat. Methods, 3(12), pp.995~1000 (2006)
  57. S. Fredriksson, , Nat Biotechnol, 20(5), pp.473~477 (2002)
  58. L. Yang, , Anal. Chem., 79(9), pp.3320~3329 (2007)
  59. T. S. Bayer, , Nat. Biotechnol., 23(3), pp.337~343 (2005)
  60. J. Liu, , Angew. Chem. Int. Ed. Engl., 45(1), pp.90~94 (2005)
  61. L. Yang, , Anal. Biochem., 380(2), pp.164~173 (2008)
  62. R. Nutiu, , Chembiochem, 5(8), pp.1139~1144 (2004)
  63. Q. Deng, , J. Chromatogr. A, 1005(1-2), pp.123~130 (2003)
  64. T. S. Romig, , J. Chromatogr. B Biomed. Sci. Appl., 731(2), pp.275~284 (1999)
  65. T. G. McCauley, , Anal. Biochem, 319(2), pp.244~250 (2003)
  66. M. Lee, , Anal Biochem, 282(1), pp.142~146 (2000)
  67. R. A. Potyrailo, , Anal. Chem., 70(16), pp.3419~3425 (1998)
  68. G. Ramsay, , Nat. Biotechnol., 16(1), pp.40~44 (1998)
  69. R. F. Macaya, , Biochemistry, 34(13), pp.4478~4492 (1995)
  70. S. Su, , Langmuir, 23(3), pp.1300~1302 (2007)
  71. L. M. Ellerby, , Science, 255(5048), pp.1113~1115 (1992)
  72. I. Gill, , Trends Biotechnol., 18(7), pp.282~296 (2000)
  73. C. Lin, , Angew. Chem. Int. Ed. Engl., 45(32), pp.5296~5301 (2006)
  74. C. Lin, , Nano Lett., 7(2), pp.507~512 (2007)
  75. N. C. Seeman, , Nature, 421(6921), pp.427~431 (2003)
  76. C. Lin, , Chemphyschem, 7(8), pp.1641~1647 (2006)
  77. U. Feldkamp, , Angew. Chem. Int. Ed. Engl., 45(12), pp.1856~1876 (2006)
  78. Y. He, , Angew. Chem. Int. Ed. Engl., 44(41), pp.6694~6696 (2005)
  79. Y. He, , J. Am. Chem. Soc., 127(35), pp.12202~12203 (2005)
  80. E. Winfree, , Nature, 394(6693), pp.539~544 (1998)
  81. H. Yan, , Science, 301(5641), pp.1882~1884 (2003)
  82. T. H. LaBean, , J. Am. Chem. Soc, 407(9), pp.1848~1860 (2000)
  83. L. C. Bock, , Nature, 355(6360), pp.564~566 (1992)
  84. N. Hamaguchi, , Anal. Biochem., 294(2), pp.126~131 (2001)
  85. S. D. Seiwert, , Chem. Biol., 7(11), pp.833~843 (2000)
  86. G. A. Soukup, , Proc. Natl. Acad. Sci. U S A, 96(7), pp.3584~3589 (1999)
  87. A. Roth, , Methods Mol. Biol., 252, pp.145~164 (2004)
  88. J. Tang, , Chem. Biol., 4(6), pp.453~459 (1997)
  89. B. Hall, , Biosens. Bioelectron., 22(9-10), pp.1939~1947 (2007)
  90. M. P. Robertson, , RNA, 10(1), pp.114~127 (2004)
  91. M. Zuker, , Curr. Opin. Struct. Biol., 10(3), pp.303~310 (2000)

관련 논문AI추천

Combination of Aptamer-Functionalized Quantum Dots and Electrophoretic Mobility Shift Assay for Specific Detection and Quantitation of Proteins of InterestEun Jeong Lee, Sang Soo Hah, Seonmi Shin, Yea Seul Cho자연과학연구소 · Quantitative Bio-Science2013 · 제32권 제1호Nano and micro structures for label-free detection of biomolecules권태윤, 손영수, 엄길호한국센서학회 · 센서학회지2010 · 제19권 제6호Electrochemical Biosensors for Biomedical and Clinical Applications: A Review박덕수, Md. Aminur Rahman, Yoon-Bo Shim대한의용생체공학회 · 의공학회지2005 · 제26권 제5호Triple-Branch Catalytic Assembly DNAzyme Motivated DNA Tweezer for Sensitive and Reliable mecA Gene Detection in Staphylococcus aureusGan Fangmin, Li Xiaoyang, Xu Meiyan, Zhao Hui한국미생물·생명공학회 · Journal of Microbiology and Biotechnology2024 · 제34권 제12호Sensitive and Enzyme-Free Pseudomonas aeruginosa Detection and Isolation via DNAzyme Cascade Triggered DNA TweezerLiu Furong, Xu Jingyuan, Yang Lihua한국미생물·생명공학회 · Journal of Microbiology and Biotechnology2024 · 제34권 제9호바이오센서김상경, 김태송, 황교선한국센서학회 · 센서학회지2009 · 제18권 제4호

이 간행물의 다른 논문 (6건)

후 컬럼 동위원소 희석법을 적용한 HPLC-ICP/MS에서의 정량분석에서 내부 표준물을 이용한 정확도와 정밀도의 개선연구박명순, 주민규, 박용남pp. 140-146법과학 단파자외선이 DNA에 미치는 영향김우중, 박희연, 임시근, 김아람pp. 147-152시야평가법과 포인트계수법에 의한 석면정량평가 연구황범구, 최윤호, 김태현, 김현자, 배용수, 김태화, 장은아pp. 153-160세프록사딘 캡슐 시험에 사용되는 유해시약인사염화탄소 대체 공정시험법 개발서나래, 이종민, 정명진, 안재형, 강여울, 전상설, 김경호, 박영신pp. 161-166산업공정에서 불산누출로 오염된 가연성 폐기물의 분석방법 연구윤철우, 강영렬, 연진모, 김우일, 김용준, 신선경, 오길종pp. 167-171
원문 보기