본문 바로가기
KERD
논문KCI 등재

Genome-wide in-locus epitope tagging of Arabidopsis proteins using prime editors

0

조회

0

다운로드

0

인용

0

참고문헌

키워드

주제분류화학

초록

Prime editors (PEs), which are CRISPR-Cas9 nickase (H840A)-reverse transcriptase fusion proteins programmed with primeediting guide RNAs (pegRNAs), can not only edit bases butalso install transversions, insertions, or deletions without bothdonor DNA and double-strand breaks at the target DNA. Asthe demand for in-locus tagging is increasing, to reflect geneexpression dynamics influenced by endogenous genomic contexts,we demonstrated that PEs can be used to introduce thehemagglutinin (HA) epitope tag to a target gene locus, enablingmolecular and biochemical studies using in-locus taggedplants. To promote genome-wide in-locus tagging, we also implementeda publicly available database that designs pegRNAsfor in-locus tagging of all the Arabidopsis genes.

Abstract

Prime editors (PEs), which are CRISPR-Cas9 nickase (H840A)-reverse transcriptase fusion proteins programmed with primeediting guide RNAs (pegRNAs), can not only edit bases butalso install transversions, insertions, or deletions without bothdonor DNA and double-strand breaks at the target DNA. Asthe demand for in-locus tagging is increasing, to reflect geneexpression dynamics influenced by endogenous genomic contexts,we demonstrated that PEs can be used to introduce thehemagglutinin (HA) epitope tag to a target gene locus, enablingmolecular and biochemical studies using in-locus taggedplants. To promote genome-wide in-locus tagging, we also implementeda publicly available database that designs pegRNAsfor in-locus tagging of all the Arabidopsis genes.

참고문헌 (24)

  1. Anzalone AV, "Searchnd-replace genome editing without double-strand breaks or donor DNA", Nature, 576, pp.149~157 (2019)
  2. Butt H, "Engineering herbicide resistance via prime editing in rice", Plant Biotechnol J, 18, pp.2370~2372 (2020)
  3. Hua K, "Precision genome engineering in rice using prime editing system", Plant Biotechnol J, 18, pp.2167~2169 (2020)
  4. Jiang YY, "Prime editing efficiently generates W542L and S621I double mutations in two ALS genes in maize", Genome Biol, 21, pp.257~ (2020)
  5. Lu YM, "Precise genome modification in tomato using an improved prime editing system", Plant Biotechnol J, 19, pp.415~417 (2021)
  6. Li HY, "Precise modifications of both exogenous and endogenous genes in rice by prime editing", Mol Plant, 13, pp.671~674 (2020)
  7. Lin QP, "Prime genome editing in rice and wheat", Nat Biotechnol, 38, pp.582~585 (2020)
  8. Tang X, "Plant prime editors enable precise gene editing in rice cells", Mol Plant, 13, pp.667~670 (2020)
  9. Xu RF, "Development of plant prime-editing systems for precise genome editing", Plant Commun, 1, pp.100043~ (2020)
  10. Xue C, "Tuning plant phenotypes by precise, graded downregulation of gene expression", Nat Biotechnol, 10, pp.1038~ (2023)[DOI]
  11. Lackner DH, "A generic strategy for CRISPR-Cas9-mediated gene tagging", Nat Commun, 6, pp.10237~ (2015)
  12. Meurer M, "Genome-wide C-SWAT library for high-throughput yeast genome tagging", Nat Methods, 15, pp.598~600 (2018)
  13. Jiang J, "Genome tagging project : tag every protein in mice through ‘artificial spermatids’", Natl Sci Rev, 6, pp.394~396 (2019)
  14. Lu YM, "Rice protein tagging project : a call for international collaborations on genome-wide in-locus tagging of rice proteins", Mol Plant, 13, pp.1663~1665 (2020)
  15. Nishimasu H, "Engineered CRISPR-Cas9 nuclease with expanded targeting space", Science, 361, pp.1259~1262 (2018)
  16. Perroud PF, "Prime editing in the model plant physcomitrium patens and its potential in the tetraploid potato", Plant Sci, 316, pp.111162~ (2022)
  17. Wang L, "Spelling changes and fluorescent tagging with prime editing vectors for plants", Front Genome Ed, 3, pp.617553~ (2021)
  18. Xu W, "Versatile nucleotides substitution in plant using an improved prime editing system", Mol Plant, 13, pp.675~678 (2020)
  19. Ma XN, "Highly efficient DNA-free plant genome editing using virally delivered CRISPR-Cas9", Nat Plants, 6, pp.773~779 (2020)
  20. Jeong YY, "Optimization of protoplast regeneration in the model plant Arabidopsis thaliana", Plant Methods, 17, pp.21~ (2021)
  21. Wang ZY, "Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1(CCA1)gene disrupts circadian rhythms and suppresses its own expression", Cell, 93, pp.1207~1217 (1998)
  22. Park J, "Cas-Designer : a web-based tool for choice of CRISPR-Cas9 target sites", Bioinformatics, 31, pp.4014~4016 (2015)
  23. Hwang GH, "PE-Designer and PE-Analyzer : web-based design and analysis tools for CRISPR prime editing", Nucleic Acids Res, 49, pp.W499~W504 (2021)
  24. Clough SJ, "Floral dip : a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana", Plant J, 16, pp.735~743 (1998)

관련 논문AI추천

이 간행물의 다른 논문 (8건)