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Y 염색체 단완 미세결실 유전자검사 사례보고

DNA Analysis of a Microdeletion Case on Y Chromosome

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초록

The Y-chromosome, as with other chromosomes in the cell, is subject to mutations. However, unlike autosomal genes, the Y chromosome does not undergo recombination,and therefore individuals from different geographical regions may have differingdistribution patterns with respect to Y-chromosome mutations. More detailed knowledgeand information regarding Y-chromosome mutations might therefore provideinsights into phylogenetic history and personal identification. Here, we describe a casestudy involving genotype-phenotype discrepancy in an Indian male individual. Wefound that the mistyping in sex determination was caused by a deletion in the amelogeninY (AMEL Y) gene. Furthermore, on examining the short tandem repeat (Y-STR)loci using the PowerPlexⓐ Y23 System, we found four more deleted loci on Yp11.2(DYS576, DYS481, DYS570, and DYS458) in this sample. We performed deletionmapping for this sample, and we propose that the microdeletion on the Yp11.2 locusoccurred approximately in the 6.44 Mb to 9.75 Mb region. Previous studies havereported that the AMEL Y deletion is a common mutation in the Indian population. Taking into account regional differences, we also analyzed several area-specific Ychromosomemutations.

Abstract

The Y-chromosome, as with other chromosomes in the cell, is subject to mutations. However, unlike autosomal genes, the Y chromosome does not undergo recombination,and therefore individuals from different geographical regions may have differingdistribution patterns with respect to Y-chromosome mutations. More detailed knowledgeand information regarding Y-chromosome mutations might therefore provideinsights into phylogenetic history and personal identification. Here, we describe a casestudy involving genotype-phenotype discrepancy in an Indian male individual. Wefound that the mistyping in sex determination was caused by a deletion in the amelogeninY (AMEL Y) gene. Furthermore, on examining the short tandem repeat (Y-STR)loci using the PowerPlexⓐ Y23 System, we found four more deleted loci on Yp11.2(DYS576, DYS481, DYS570, and DYS458) in this sample. We performed deletionmapping for this sample, and we propose that the microdeletion on the Yp11.2 locusoccurred approximately in the 6.44 Mb to 9.75 Mb region. Previous studies havereported that the AMEL Y deletion is a common mutation in the Indian population. Taking into account regional differences, we also analyzed several area-specific Ychromosomemutations.

참고문헌 (10)

  1. Takayama T, "Determination of deleted regions from Yp11.2 of an amelogenin negative male", Leg Med, 11(suppl 1), pp.s578~s580 (2009)
  2. Jobling MA, "Structural variation on the short arm of the human Y chromosome : recurrent multigene deletions encompassing Amelogenin Y", Hum Mol Genet, 16, pp.307~316 (2007)
  3. Chen W, "Detection of the deletion on Yp11.2 in a Chinese population", Forensic Sci Int Genet, 8, pp.73~79 (2014)
  4. Turrina S, "Two additional reports of deletion on the short arm of the Y chromosome", Forensic Sci Int Genet, 5, pp.242~246 (2011)
  5. Chang YM, "A distinct Y-STR haplotype for Amelogenin negative males characterized by a large Y(p)11.2 (DYS458-MSY1-AMEL-Y) deletion", Forensic Sci Int, 166, pp.115~120 (2007)
  6. Lattanzi W, "A large interstitial deletion encompassing the amelogenin gene on the short arm of the Y chromosome", Hum Genet, 116, pp.395~401 (2005)
  7. Yong RY, "Molecular characterization of a polymorphic 3-Mb deletion at chromosome Yp11.2 containing AMELY locus in Singapore and Malaysia populations", Hum Genet, 122, pp.237~249 (2007)
  8. Kumagai R, "DNA analysis of family members with deletion in Yp11.2 region containing amelogenin locus", Leg Med, 10, pp.39~42 (2008)
  9. Hares DR, "Expanding the CODIS core loci in the United States", Forensic Sci Int Genet, 6, pp.e52~e54 (2012)
  10. Turrina S, "Evaluation of PowerPlex􀋓 Fusion System on samples from forensic casework", Forensic Sci Int Genet Suppl, 4, pp.e210~e211 (2013)

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