Omega Rhodopsins: A Versatile Class of Microbial Rhodopsins

키워드

참고문헌 (76)

1. Spudich JL, "Retinylidene proteins : structures and functions from archaea to humans", Annu. Rev. Cell Dev. Biol, 16, pp.365~392 (2000)
2. Kandori H, "Hydration switch model for the proton transfer in the Schiff base region of bacteriorhodopsin", Biochim. Biophys. Acta, 1658, pp.72~79 (2004)
3. Ernst OP, "Microbial and animal rhodopsins : structures, functions, and molecular mechanisms", Chem. Rev, 114, pp.126~163 (2014)
4. Fuhrman JA, "Proteorhodopsins : an array of physiological roles? Nat", Rev. Microbiol, 6, pp.488~494 (2008)
5. Oesterhelt D, "Rhodopsin-like protein from the purple membrane of Halobacterium halobium", Nat. New Biol, 233, pp.149~152 (1971)
6. Oesterhelt D, "Functions of a new photoreceptor membrane", Proc. Natl. Acad. Sci. USA, 70, pp.2853~2857 (1973)
7. Hildebrand E, "Two photosystems controlling behavioural responses of Halobacterium halobium", Nature, 257, pp.46~48 (1975)
8. Schobert B, "Halorhodopsin is a light-driven chloride pump", J. Biol. Chem, 257, pp.10306~10313 (1982)
9. Nagel G, "Channelrhodopsin-1 : a light-gated proton channel in green algae", Science, 296, pp.2395~2398 (2002)
10. Sineshchekov OA, "Two rhodopsins mediate phototaxis to low-and high-intensity light in Chlamydomonas reinhardtii", Proc. Natl. Acad. Sci. USA, 99, pp.8689~8694 (2002)
11. Beja O, "Bacterial rhodopsin : evidence for a new type of phototrophy in the sea", Science, 289, pp.1902~1906 (2000)
12. Mongodin EF, "The genome of Salinibacter ruber : convergence and gene exchange among hyperhalophilic bacteria and archaea", Proc. Natl. Acad. Sci. USA, 102, pp.18147~18152 (2005)
13. Balashov SP, "Xanthorhodopsin : a proton pump with a lightharvesting carotenoid antenna", Science, 309, pp.2061~2064 (2005)
14. Sharma AK, "Actinorhodopsins : proteorhodopsin-like gene sequences found predominantly in non-marine environments", Environ. Microbiol, 10, pp.1039~1056 (2008)
15. Kwon SK, "Genomic makeup of the marine flavobacterium Nonlabens(Donghaeana)dokdonensis and identification of a novel class of rhodopsins", Genome Biol. Evol, 5, pp.187~199 (2013)
16. Yoshizawa S, "Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria", Proc. Natl. Acad. Sci. USA, 111, pp.6732~6737 (2014)
17. Inoue K, "A light-driven sodium ion pump in marine bacteria", Nat. Commun, 4, pp.1678~ (2013)
18. Inoue K, "A natural light-driven inward proton pump", Nat. Commun, 7, pp.13415~ (2016)
19. Needham DM, "A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators", Proc. Natl. Acad. Sci. USA, 116, pp.20574~20583 (2019)
20. Pushkarev A, "A distinct abundant group of microbial rhodopsins discovered using functional metagenomics", Nature, 558, pp.595~599 (2018)
21. Kim K, "Crystal structure and functional characterization of a light-driven chloride pump having an NTQ motif", Nat. Commun, 7, pp.12677~ (2016)
22. Morizumi T, "X-ray crystallographic structure and oligomerization of Gloeobacter rhodopsin", Sci. Rep, 9, pp.11283~ (2019)
23. Shibata M, "Oligomeric states of microbial rhodopsins determined by high-speed atomic force microscopy and circular dichroic spectroscopy", Sci. Rep, 8, pp.8262~ (2018)
24. Luecke H, "Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore", Proc. Natl. Acad. Sci. USA, 105, pp.16561~16565 (2008)
25. Balashov SP, "Reconstitution of gloeobacter rhodopsin with echinenone : role of the 4-keto group", Biochemistry, 49, pp.9792~9799 (2010)
26. Tsukamoto T, "Thermal and spectroscopic characterization of a proton pumping rhodopsin from an extreme thermophile", J. Biol. Chem, 288, pp.21581~21592 (2013)
27. Tsukamoto T, "X-ray crystallographic structure of thermophilic rhodopsin : implications for high thermal stability and optogenetic function", J. Biol. Chem, 291, pp.12223~12232 (2016)
28. Tian B, "Carotenoid biosynthesis in extremophilic Deinococcus-Thermus bacteria", Trends Microbiol, 18, pp.512~520 (2010)
29. Misra R, "Retinal-salinixanthin interactions in a thermophilic rhodopsin", J. Phys. Chem. B, 123, pp.10~20 (2019)
30. Nakamura Y, "Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids", DNA Res, 10, pp.137~145 (2003)
31. Choi AR, "Cyanobacterial light-driven proton pump, gloeobacter rhodopsin : complementarity between rhodopsin-based energy production and photosynthesis", PLoS One, 9, pp.e110643~ (2014)
32. Imasheva ES, "Reconstitution of Gloeobacter violaceus rhodopsin with a lightharvesting carotenoid antenna", Biochemistry, 48, pp.10948~10955 (2009)
33. Iyer ES, "Efficient femtosecond energy transfer from carotenoid to retinal in gloeobacter rhodopsin-salinixanthin complex", J. Phys. Chem. B, 119, pp.2345~2349 (2015)
34. Jana S, "Retinal binding to Apo-Gloeobacter rhodopsin : the role of pH and retinal-carotenoid interaction", J. Phys. Chem. B, 121, pp.10759~10769 (2017)
35. Rusch DB, "The Sorcerer II Global Ocean Sampling expedition : northwest Atlantic through eastern tropical Pacific", PLoS Biol, 5, pp.e77~ (2007)
36. Jezberova J, "Insights into variability of actinorhodopsin genes of the LG1 cluster in two different freshwater habitats", PLoS One, 8, pp.e68542~ (2013)
37. Sharma AK, "Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria", ISME J, 3, pp.726~737 (2009)
38. Keffer JL, "Characterization of an unconventional rhodopsin from the freshwater actinobacterium Rhodoluna lacicola", J. Bacteriol., 197, pp.2704~2712 (2015)
39. Nakamura S, "Photochemical characterization of actinorhodopsin and its functional existence in the natural host", Biochim. Biophys. Acta, 1857, pp.1900~1908 (2016)
40. Dwulit-Smith JR, "acI actinobacteria assemble a functional actinorhodopsin with natively synthesized retinal", Appl. Environ. Microbiol, 84, pp.e01678~ (2018)
41. Mizuno CM, "Genomes of planktonic Acidimicrobiales : widening horizons for marine Actinobacteria by metagenomics", mBio, 6, pp.e02083~ (2015)
42. Pushkarev A, "Functional metagenomic screen reveals new and diverse microbial rhodopsins", ISME J, 10, pp.2331~2335 (2016)
43. Kato Y, "Kinetic analysis of H+-Na+ selectivity in a light-driven Na+-pumping rhodopsin", J. Phys. Chem. Lett, 6, pp.5111~5115 (2015)
44. Zhao H, "Coexistence of light-driven Na+ and H+ transport in a microbial rhodopsin from Nonlabens dokdonensis", J. Photochem. Photobiol. B, 172, pp.70~76 (2017)
45. Li H, "In vitro demonstration of dual light-driven Na(+)", H(+)pumping by a microbial rhodopsin, 2015, pp.109, 1446~1453
46. da Silva GF, "Cation-specific conformations in a dual-function ion-pumping microbial rhodopsin", Biochemistry, 54, pp.3950~3959 (2015)
47. Kovalev K, "Structure and mechanisms of sodiumpumping KR2 rhodopsin", Sci. Adv., 5, pp.eaav2671~ (2019)
48. Tsunoda SP, "Functional characterization of sodium-pumping rhodopsins with different pumping properties", PLoS One, 12, pp.e0179232~ (2017)
49. Gushchin I, "Crystal structure of a light-driven sodium pump", Nat. Struct. Mol. Biol, 22, pp.390~395 (2015)
50. Kato HE, "Structural basis for Na+ transport mechanism by a lightdriven Na+ pump", Nature, 521, pp.48~53 (2015)
51. Inoue K, "The role of the NDQ motif in sodium-pumping rhodopsins", Angew. Chem. Int. Ed. Engl, 54, pp.11536~11539 (2015)
52. Abe-Yoshizumi R, "Role of Asn112 in a light-driven sodium ion-pumping rhodopsin", Biochemistry, 55, pp.5790~5797 (2016)
53. Tahara S, "Ultrafast photoreaction dynamics of a lightdriven sodium-ion-pumping retinal protein from Krokinobacter eikastus revealed by femtosecond time-resolved absorption spectroscopy", J. Phys. Chem. Lett, 6, pp.4481~4486 (2015)
54. Hontani Y, "The photochemistry of sodium ion pump rhodopsin observed by watermarked femto-to submillisecond stimulated Raman spectroscopy", Phys. Chem. Chem. Phys, 18, pp.24729~24736 (2016)
55. Suomivuori CM, "Energetics and dynamics of a light-driven sodium-pumping rhodopsin", Proc. Natl. Acad. Sci. USA, 114, pp.7043~7048 (2017)
56. Nakajima Y, "Presence of a haloarchaeal halorhodopsin-like Clpump in marine bacteria", Microbes Environ, 33, pp.89~97 (2018)
57. Kandori H, "Ion-pumping microbial rhodopsins", Front. Mol. Biosci, 2, pp.52~ (2015)
58. Sasaki J, "Conversion of bacteriorhodopsin into a chloride ion pump", Science, 269, pp.73~75 (1995)
59. Hasemi T, "Characterization of a Cyanobacterial chloride-pumping rhodopsin and its conversion into a proton pump", J. Biol. Chem, 291, pp.355~362 (2016)
60. Inoue K, "Spectroscopic study of a light-driven chloride ion pump from marine bacteria", J. Phys. Chem. B, 118, pp.11190~11199 (2014)
61. Tsukamoto T, "Implications for the light-driven chloride ion transport mechanism of Nonlabens marinus rhodopsin 3 by its photochemical characteristics", J. Phys. Chem. B, 121, pp.2027~2038 (2017)
62. Hosaka T, "Structural mechanism for light-driven transport by a new type of chloride ion pump, Nonlabens marinus rhodopsin-3", J. Biol. Chem, 291, pp.17488~17495 (2016)
63. Inoue K, "Asymmetric functional conversion of eubacterial light-driven ion pumps", J. Biol. Chem, 291, pp.9883~9893 (2016)
64. Anashkin VA, "Engineering a carotenoidbinding site in Dokdonia sp. PRO95 Na+-translocating rhodopsin by a single amino acid substitution", Photosynth. Res., 136, pp.161~169 (2018)
65. Konno M, "Mutant of a light-driven sodium ion pump can transport cesium ions", J. Phys. Chem. Lett, 7, pp.51~55 (2016)
66. Inoue K, "Red-shifting mutation of light-driven sodium-pump rhodopsin", Nat. Commun, 10, pp.1993~ (2019)
67. Mackin KA, "An empirical test of convergent evolution in rhodopsins", Mol. Biol. Evol, 31, pp.85~95 (2014)
68. Shalaeva DN, "Eukaryotic G protein-coupled receptors as descendants of prokaryotic sodiumtranslocating rhodopsins", Biol. Direct, 10, pp.63~ (2015)
69. Pinhassi J, "Marine bacterial and archaeal ion-pumping rhodopsins : genetic diversity, physiology, and ecology", Microbiol. Mol. Biol. Rev, 80, pp.929~954 (2016)
70. Albers SV, "Bioenergetics and solute uptake under extreme conditions", Extremophiles, 5, pp.285~294 (2001)
71. Hase CC, "Sodium ion cycle in bacterial pathogens : evidence from cross-genome comparisons", Microbiol. Mol. Biol. Rev, 65, pp.353~370 (2001)
72. Riedel T, "Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein", PLoS One, 8, pp.e57487~ (2013)
73. Kwon YM, "Diversity and functional analysis of light-driven pumping rhodopsins in marine Flavobacteria", Microbiologyopen, 5, pp.212~223 (2016)
74. Guerrero LD, "Evidence of microbial rhodopsins in Antarctic Dry Valley edaphic systems", Environ. Microbiol, 19, pp.3755~3767 (2017)
75. Hamilton JJ, "Metabolic network analysis and metatranscriptomics reveal auxotrophies and nutrient sources of the cosmopolitan freshwater microbial lineage acI", mSystems, 2, pp.e00091~ (2017)
76. Wurzbacher C, "Environmental actinorhodopsin expression revealed by a new in situ filtration and fixation sampler", Environ. Microbiol. Rep, 4, pp.491~497 (2012)

관련 논문AI추천