The application of new breeding technology based on gene editing in pig industry - A review

키워드

참고문헌 (100)

1. Craft WA, "Fifty years of progress in swine breeding", J Anim Sci, 17, pp.960~980 (1958)[DOI]
2. Knap PW, "Resource allocation theory applied to farm animal production", pp.210~229 (2009), CABI International
3. Yang TS, "Advances in zoology research", pp.187~200 (2012), Nova Science Publishers, Inc.
4. Merks JWM, "New phenotypes for new breeding goals in pigs", Animal, 6(4), pp.535~543 (2012)[DOI]
5. Hermesch S, "Selection for productivity and robustness traits in pigs", Anim Prod Sci, 55, pp.1437~1447 (2015)[DOI]
6. Ryu J, "Use of gene-editing technology to introduce targeted modifications in pigs", J Anim Sci Biotechnol, 9, pp.5~ (2018)[DOI]
7. Yang H, "Genome editing of pigs for agriculture and biomedicine", Front Genet, 9, pp.360~ (2018)[DOI]
8. Zhao J, "Genome editing in large animals : current status and future prospects", Natl Sci Rev, 6, pp.402~420 (2019)[DOI]
9. Penrith ML, "With or without a vaccine—A review of complementary and alternative approaches to managing african swine fever in resource-constrained smallholder settings", Vaccines, 9, pp.116~ (2021)[DOI]
10. Hansen PJ, "Prospects for gene introgression or gene editing as a strategy for reduction of the impact of heat stress on production and reproduction in cattle", Theriogenology, 154, pp.190~202 (2020)[DOI]
11. Tanihara F, "Current status of the application of gene editing in pigs", J Reprod Dev, 67, pp.177~187 (2021)[DOI]
12. Zhang J, "The advancements, challenges, and future implications of the CRISPR", Cas9system in swine research, 2021, pp.48, 347~360
13. Petersen GEL, "Gene editing in Farm Animals : A Step Change for Eliminating Epidemics on our Doorstep", bioRxiv, ~ (2021)
14. Moehle EA, "Targeted gene addition into a specified location in the human genome using designed zinc finger nucleases", Proc Natl Acad Sci USA, 104, pp.3055~3060 (2007)[DOI]
15. Christian M, "Targeting DNA doublestrand breaks with TAL effector nucleases", Genetics, 186, pp.757~761 (2010)[DOI]
16. Cong L, "Multiplex genome engineering using CRISPR", Cas systems, 2013, pp.339, 819~823
17. Stoddard BL, "Homing endonucleases : from microbial genetic invaders to reagents for targeted DNA modification", Structure, 19, pp.7~15 (2011)[DOI]
18. Smith J, "Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains", Nucleic Acids Res, 28, pp.3361~3369 (2000)[DOI]
19. Bibikova M, "Stimulation of homologous recombination through targeted cleavage by chimeric nucleases", Mol Cell Biol, 21, pp.289~297 (2001)[DOI]
20. Streubel J, "TAL effector RVD specificities and efficiencies", Nat Biotechnol, 30, pp.593~595 (2012)[DOI]
21. Richter A, "Methods in Molecular Biology, vol 1338", pp.9~25 (2016), Humana Press
22. Cermak T, "Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA14 targeting", Nucleic Acids Res, 39, pp.e82~ (2011)[DOI]
23. Cermak T, "Chromosomal mutagenesis. Methods in molecular biology (methods and protocols), vol 1239", pp.133~159 (2015), Humana Press
24. Morbitzer R, "Assembly of custom TALE-type DNA binding domains by modular cloning", Nucleic Acids Res, 39, pp.5790~5799 (2011)[DOI]
25. Zhang F, "Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription", Nat Biotechnol, 29, pp.149~153 (2011)[DOI]
26. Deng P, "Viral vectors for gene therapy. Methods in molecular biology, vol 1937", pp.47~58 (2019), Humana Press
27. Nitsch S, "Epigenome editing. Methods in molecular biology, vol 1767", pp.89~109 (2018), Humana Press
28. Jinek M, "A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity", Science, 337, pp.816~821 (2012)[DOI]
29. Josephs EA, "Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage", Nucleic Acids Res, 43, pp.8924~8941 (2015)[DOI]
30. Sternberg SH, "Conformational control of DNA target cleavage by CRISPR-Cas9", Nature, 527, pp.110~113 (2015)[DOI]
31. Lee K, "Current progress of genome editing in livestock", Theriogenology, 150, pp.229~235 (2020)[DOI]
32. Nishimasu H, "Crystal structure of Cas9 in complex with guide RNA and target DNA", Cell, 156, pp.935~949 (2014)[DOI]
33. Komor AC, "Programmable editing of a target base in genomic DNA without doublestranded DNA cleavage", Nature, 533, pp.420~424 (2016)[DOI]
34. Gaudelli NM, "Programmable base editing of A. T to G. C in genomic DNA without DNA cleavage", Nature, 551, pp.464~471 (2017)[DOI]
35. Richter MF, "Phage-assisted evolution of an adenine base editor with improved Cas domain compatibility and activity", Nat Biotechnol, 38, pp.883~891 (2020)[DOI]
36. Komor AC, "Improved base excision repair inhibition and bacteriophage Mu Gam protein yields C : G-to-T : A base editors with higher efficiency and product purity", Sci Adv, 3, pp.eaao4774~ (2017)[DOI]
37. Anzalone AV, "Search-andreplace genome editing without double-strand breaks or donor DNA", Nature, 576, pp.149~157 (2019)[DOI]
38. Marzec M, "Prime editing : a new way for genome editing", Trends Cell Biol, 30, pp.257~259 (2020)[DOI]
39. Grobet L, "A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle", Nat Genet, 17, pp.71~74 (1997)[DOI]
40. Grobet L, "Molecular definition of an allelic series of mutations disrupting the myostatin function and causing double-muscling in cattle", Mamm Genome, 9, pp.210~213 (1998)[DOI]
41. Czaja W, "Myostatin regulates pituitary development and hepatic IGF1", Am J Physiol Endocrinol Metab, 316, pp.E1036~E1049 (2019)[DOI]
42. Qian L, "Targeted mutations in myostatin by zinc-finger nucleases result in double-muscled phenotype in Meishan pigs", Sci Rep, 5, pp.14435~ (2015)[DOI]
43. Wang K, "Efficient generation of myostatin mutations in pigs using the CRISPR", Cas9 system, 2015, pp.5, 16623~
44. Wang K, "Efficient generation of orthologous point mutations in pigs via CRISPR-assisted ssODNmediated homology-directed repair", Mol Ther Nucleic Acids, 5, pp.e396~ (2016)[DOI]
45. Wang K, "CRISPR", Cas9-mediated knockout of myostatin in Chinese indigenous Erhualian pigs, 2017, pp.26, 799~805
46. Zou YL, "Generation of pigs with a Belgian Blue mutation in MSTN using CRISPR", Cpf1-assisted ssODNmediated homologous recombination, 2019, pp.18, 1329~1336
47. Paek HJ, "Association of myostatin deficiency with collagen related disease-umbilical hernia and tippy toe standing in pigs", Transgenic Res, 30, pp.663~674 (2021)[DOI]
48. Xiang G, "Editing porcine IGF2 regulatory element improved meat production in Chinese Bama pigs", Cell Mol Life Sci, 75, pp.4619~4628 (2018)[DOI]
49. Li R, "Precise editing of myostatin signal peptide by CRISPR", Cas9 increases the muscle mass of Liang Guang Small Spotted pigs, 2020, pp.29, 149~163
50. Shi I, "The SCF-Fbxo40complex induces IRS1 ubiquitination in skeletal muscle, limiting IGF1 signaling", Dev Cell, 21, pp.835~847 (2011)[DOI]
51. Zou Y, "An FBXO40 knockout generated by CRISPR", Cas9 causes muscle hypertrophy in pigs without detectable pathological effects, 2018, pp.498, 940~945
52. Zhu X, "CRISPR", Cas9-mediated biallelic knockout of IRX3 reduces the production and survival of somatic cell-cloned Bama minipigs, 2020, pp.10, 501~
53. Hou L, "Pig has no uncoupling protein 1", Biochem Biophys Res Commun, 487, pp.795~800 (2017)[DOI]
54. Trayhurn P, "Evidence from immunoblotting studies on uncoupling protein that brown adipose tissue is not present in the domestic pig", Can J Physiol Pharmacol, 67, pp.1480~1485 (1989)[DOI]
55. Berg F, "The uncoupling protein 1 gene (UCP1) is disrupted in the pig lineage: A genetic explanation for poor thermoregulation in piglets", PLoS Genet, 2, pp.e129~ (2006)[DOI]
56. Lin J, "Cold adaptation in pigs depends on UCP3 in beige adipocytes", J Mol Cell Biol, 9, pp.364~375 (2017)[DOI]
57. Zhang Q, "Reconstitution of UCP1 using CRISPR", Cas9 in the white adipose tissue of pigs decreases fat deposition and improves thermogenic capacity, 2017, pp.114, E9474~E9482
58. Commins SP, "Delayed anaphylaxis to alpha-gal, an oligosaccharide in mammalian meat", Allergol Int, 65, pp.16~20 (2016)[DOI]
59. de la Fuente J, "Alpha-gal syndrome : challenges to understanding sensitization and clinical reactions to alpha-gal", Expert Rev Mol Diagn, 20, pp.905~911 (2020)[DOI]
60. "FDA Approves first-of-its-kind intentional genomic alteration in line of domestic pigs for both human food, potential therapeutic uses" (2020)[URL]
61. Jahan M, "The nonhuman glycan, N-glycolylneuraminic acid (Neu5Gc), is not expressed in all organs and skeletal muscles of nine animal species", Food Chem, 343, pp.128439~ (2021)[DOI]
62. Tangvoranuntakul P, "Human uptake and incorporation of an immunogenic nonhuman dietary sialic acid", Proc Natl Acad Sci USA, 100, pp.12045~12050 (2003)[DOI]
63. Alisson-Silva F, "Human risk of diseases associated with red meat intake : Analysis of current theories and proposed role for metabolic incorporation of a nonhuman sialic acid", Mol Aspects Med, 51, pp.16~30 (2016)[DOI]
64. Chuang Ck, "Generation of GGTA1mutant pigs by direct pronuclear microinjection of CRISPR", Cas9 plasmid vectors, 2017, pp.28, 174~181
65. Tu CF, "Lessening of porcine epidemic diarrhoea virus susceptibility in piglets after editing of the CMP-N-glycolylneuraminic acid hydroxylase gene with CRISPR", Cas9 to nullify N-glycolylneuraminic acid expression, 2019, pp.14, e0217236~
66. Yen CH, "Scaffold derived from GGTA1 and CMAH double knockout pigs elicits only slight inflammation in a gene-edited pig model", Materialia, 14, pp.100836~ (2020)[DOI]
67. Ghosh D, "Advances in animal genomics", pp.75~89 (2021), Elsevier Inc
68. You W, "CRISPR", Cas9-mediated specific integration of Fat-1 and IGF-1 at the pRosa26 locus, 2021, pp.12, 1027~
69. Gu H, "Targeted overexpression of PPARγin skeletal muscle by random insertion and CRISPR", Cas9 transgenic pig cloning enhances oxidative fiber formation and intramuscular fat deposition, 2021, pp.35, e21308~
70. Whitworth KM, "Use of the CRISPR", Cas9 system to produce genetically engineered pigs from in vitro-derived oocytes and embryos, 2014, pp.91, 78~
71. Burkard C, "Precision engineering for PRRSV resistance in pigs : Macrophages from genome edited pigs lacking CD163 SRCR5 domain are fully resistant to both PRRSV genotypes while maintaining biological function", PLoS Pathogens, 13, pp.e1006206~ (2017)[DOI]
72. Yang H, "CD163 knockout pigs are fully resistant to highly pathogenic porcine reproductive and respiratory syndrome virus", Antiviral Res, 151, pp.63~70 (2018)[DOI]
73. Guo C, "Highly efficient generation of pigs harboring a partial deletion of the CD163 SRCR5 domain, which are fully resistant to porcine reproductive and respiratory syndrome virus 2 infection", Front Immunol, 10, pp.1846~ (2019)[DOI]
74. Wang H, "Deletion of CD163 exon 7confers resistance to highly pathogenic porcine reproductive and respiratory viruses on pigs", Int J Biol Sci, 15, pp.1993~2005 (2019)[DOI]
75. Xu K, "CD163 and pAPN double-knockout pigs are resistant to PRRSV and TGEV and exhibit decreased susceptibility to PDCoV while maintaining normal production performance", elife, 9, pp.e57132~ (2020)[DOI]
76. Tanihara F, "Generation of CD163-edited pig via electroporation of the CRISPR", Cas9 system into porcine in vitro-fertilized zygotes, 2021, pp.32, 147~154
77. Lillico SG, "Mammalian interspecies substitution of immune modulatory alleles by genome editing", Sci Rep, 6, pp.21645~ (2016)[DOI]
78. Popescu L, "Genetically edited pigs lacking CD163 show no resistance following infection with the ASFV isolate, Georgia 2007-1", Virology, 501, pp.102~106 (2017)[DOI]
79. Whitworth KM, "Resistance to coronavirus infection in amino peptidase N-deficient pigs", Transgenic Res, 28, pp.21~32 (2019)[DOI]
80. Xie Z, "Genetically modified pigs are protected from classical swine fever virus", Plos Pathog, 14, pp.e1007193~ (2018)[DOI]
81. Van Breedam W, "Porcine reproductive and respiratory syndrome virus entry into the porcine macrophage", J Gen Virol, 91(Pt 7), pp.1659~1667 (2010)[DOI]
82. Prather RS, "An intact sialoadhesin(Sn-SIGLEC1-CD169)is not required for attachment", internalization of the porcine reproductive and respiratory syndrome virus, 2013, pp.87, 9538~9546
83. Zhang Q, "PRRS virus receptors and their role for pathogenesis", Vet Microbiol, 177, pp.229~241 (2015)[DOI]
84. Whitworth KM, "Gene-edited pigs are protected from porcine reproductive and respiratory syndrome virus", Nat Biotechnol, 34, pp.20~22 (2016)[DOI]
85. Burkard C, "Pigs lacking the scavenger receptor cysteine-rich domain 5 of CD163 are resistant to porcine reproductive and respiratory syndrome virus 1 infection", J Virol, 92, pp.e00415~e00418 (2018)[DOI]
86. Whitworth KM, "Gene editing as applied to prevention of reproductive porcine reproductive and respiratory syndrome", Mol Reprod Dev, 84, pp.926~923 (2017)[DOI]
87. Alcami A, "Interaction of African swine fever virus with macrophages", Virus Res, 17, pp.93~104 (1990)[DOI]
88. Sanchez-Torres C, "Expression of porcine CD163 on monocytes", macrophages correlates with permissiveness to African swine fever infection, 2003, pp.148, 2307~2323
89. Palgrave CJ, "Species-specific variation in RELA underlies differences in NF-kappaB activity : a potential role in African swine fever pathogenesis", J Virol, 85, pp.6008~6014 (2011)[DOI]
90. Lillico SG, "Live pigs produced from genome edited zygotes", Sci Rep, 3, pp.2847~ (2013)[DOI]
91. McCleary S, "Substitution of warthog NF-κB motifs into RELA of domestic pigs is not sufficient to confer resilience to African swine fever virus", Sci Rep, 10, pp.8951~ (2020)[DOI]
92. Hübner A, "Efficient inhibition of African swine fever virus replication by CRISPR", Cas9 targeting of the viral p30 gene (CP204L), 2018, pp.8, 1449~
93. Wang Q, "Emerging and reemerging coronaviruses in pigs", Curr Opin Virol, 34, pp.39~49 (2019)[DOI]
94. Song D, "Porcine epidemic diarrhea : a review of current epidemiology and available vaccines", Clin Exp Vaccine Res, 4, pp.166~176 (2015)[DOI]
95. Sun R, "Genetic variability and phylogeny of current Chinese Porcine epidemic diarrhea virus strains based on spike, ORF3, and membranegenes", Sci World J, 2014, pp.208439~ (2014)[DOI]
96. Hu S, "Transgenic shRNA pigs reduce susceptibility to foot and mouth disease virus infection", eLife, 4, pp.e06951~ (2015)[DOI]
97. Schmidt SM, "The evolving landscape around genome editing in agriculture : Many countries have exempted or move to exempt forms of genome editing from GMO regulation of crop plants", EMBO Rep, 21, pp.e50680~ (2020)[DOI]
98. Entine J, "Regulatory approaches for genome edited agricultural plants in select countries and jurisdictions around the world", Transgenic Res, 30, pp.551~584 (2021)[DOI]
99. Van Enennaam AL, "Genetic engineering of livestock : The opportunity cost of regulatory delay", Annu Rev Anim Biosci, 9, pp.453~478 (2021)[DOI]
100. "New plant breeding techniques: EU Commission finds GMO legislation not fit for purpose" (2021)[URL]

관련 논문AI추천