Optimized pretreatment conditions for the environmental DNA (eDNA) analysis of Apostichopus japonicus

키워드

참고문헌 (55)

1. Abdul-Muneer PM, "Application of microsatellite markers in conservation genetics and fisheries management : recent advances in population structure analysis and conservation strategies", Genet Res Int, 2014, pp.691759~ (2014)
2. Alam MJ, "Assessment of fish biodiversity in four Korean rivers using environmental DNA metabarcoding", PeerJ, pp.e9508~ (2020)
3. Allentoft ME, "The half-life of DNA in bone : measuring decay kinetics in 158 dated fossils", Proc Biol Sci, 279, pp.4724~4733 (2012)
4. Armbruster DA, "Limit of blank, limit of detection and limit of quantitation", Clin Biochem Rev, 1(Suppl 1), pp.S49~S52 (2008)
5. Azarian C, "Population differentiation from environmental DNA : investigating the potential of haplotype presence", absence-based analysis of molecular variance, 2021, pp.3, 541~552
6. Bastos Gomes G, "Use of environmental DNA(eDNA)and water quality data to predict protozoan parasites outbreaks in fish farms", Aquaculture, 479, pp.467~473 (2017)
7. Bogenhagen D, "The number of mitochondrial deoxyribonucleic acid genomes in mouse L and human HeLa cells : quantitative isolation of mitochondrial deoxyribonucleic acid", J Biol Chem, 249, pp.7991~7995 (1974)
8. Bohmann K, "Environmental DNA for wildlife biology and biodiversity monitoring", Trends Ecol Evol, 29, pp.358~367 (2014)
9. Bonar SA, "Standard methods for sampling North American freshwater fishes" (2009), American Fisheries Society
10. Bos DH, "Inferring population history and demography using microsatellites, mitochondrial DNA, and major histocompatibility complex(MHC)genes", Evol Int J Org Evol, 62, pp.1458~1468 (2008)
11. Brown WM, "Mitochondrial DNA sequences of primates : tempo and mode of evolution", J Mol Evol, 18, pp.225~239 (1982)
12. Claassen S, "A comparison of the efficiency of five different commercial DNA extraction kits for extraction of DNA from faecal samples", J Microbiol Methods, 94, pp.103~110 (2013)
13. Das J, "The role of mitochondrial respiration in physiological and evolutionary adaptation", BioEssays, 28, pp.890~901 (2006)
14. Dauphin LA, "Comparison of five commercial DNA extraction kits for the recovery of Yersinia pestis DNA from bacterial suspensions and spiked environmental samples", J Appl Microbiol, 108, pp.163~172 (2009)
15. D’Erchia AM, "Tissue-specific mtDNA abundance from exome data and its correlation with mitochondrial transcription, mass and respiratory activity", Mitochondrion, 20, pp.13~21 (2015)
16. DeSalle R, "MtDNA : the small workhorse of evolutionary studies", Front Biosci, 22, pp.873~887 (2017)
17. Dong Y, "Growth and oxygen consumption of the juvenile sea cucumber Apostichopus japonicus(Selenka)at constant and fluctuating water temperatures", Aquac Res, 37, pp.1327~1333 (2006)
18. El Bali L, "Comparative study of seven commercial kits for human DNA extraction from urine samples suitable for DNA biomarker-based public health studies", J Biomol Tech, 25, pp.96~110 (2014)
19. Evans NT, "Fish community assessment with eDNA metabarcoding : effects of sampling design and bioinformatic filtering", Can J Fish Aquat Sci, 74, pp.1362~1374 (2017)
20. Evrard O, "Environmental DNA provides information on sediment sources : a study in catchments affected by Fukushima radioactive fallout", Sci Total Environ, 665, pp.873~881 (2019)
21. Forootan A, "Methods to determine limit of detection and limit of quantification in quantitative real-time PCR(qPCR)", Biomol Detect Quantif, 12, pp.1~6 (2017)
22. Goldberg CS, "Critical considerations for the application of environmental DNA methods to detect aquatic species", Methods Ecol Evol, 7, pp.1299~1307 (2016)
23. Harrison RG, "Animal mitochondrial DNA as a genetic marker in population and evolutionary biology", Trends Ecol Evol, 4, pp.6~11 (1989)
24. Hinlo R, "Methods to maximise recovery of environmental DNA from water samples", PLOS ONE, 12, pp.e0179251~ (2017)
25. Hoshino T, "Molecular quantification of environmental DNA using microfluidics and digital PCR", Syst Appl Microbiol, 35, pp.390~395 (2012)
26. Jiang J, "Mitochondrial genome and nuclear markers provide new insight into the evolutionary history of macaques", PLOS ONE, 11, pp.e0154665~ (2016)
27. Jo T, "Estimating shedding and decay rates of environmental nuclear DNA with relation to water temperature and biomass", Environ DNA, 2, pp.140~151 (2020)
28. Jo T, "Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution", Ecol Evol, 9, pp.1135~1146 (2019)
29. Klymus KE, "Reporting the limits of detection and quantification for environmental DNA assays", Environ DNA, 2, pp.271~282 (2020)
30. Kwong SLT, "Quantifying shedding and degradation rates of environmental DNA (eDNA) from Pacific crown-of-thorns seastar (Acanthaster cf. solaris)", Mar Biol, 168, pp.1~10 (2021)
31. Larionov A, "A standard curve based method for relative real time PCR data processing", BMC Bioinf, 6, pp.1~16 (2005)
32. Lin C, "Habitat enhancement and rehabilitation", Dev Aquac Fish Sci, 39, pp.333~351 (2015)
33. Liu J, "Spatial distribution, population structures, management, and conservation", Dev Aquac Fish Sci, 39, pp.77~86 (2015)
34. Liu Y, "Study on aestivating habit of sea cucumber Apostichopus japonicus(Selenka)", J Fish Sci China, 3, pp.17~57 (1996)
35. Liu Y, "The first set of universal nuclear protein-coding loci markers for avian phylogenetic and population genetic studies", Sci Rep, 8, pp.1~12 (2018)
36. Merheb M, "Mitochondrial DNA, a powerful tool to decipher ancient human civilization from domestication to music, and to uncover historical murder cases", Cells, 8, pp.433~ (2019)
37. Morita K, "Size-dependent thermal preferences in a pelagic fish", Oikos, 119, pp.1265~1272 (2010)
38. Murphy BR, "Fisheries techniques", Citeseer, ~ (1996)
39. Ortiz-Pineda PA, "Gene expression profiling of intestinal regeneration in the sea cucumber", BMC Genomics, 10, pp.262~ (2009)
40. Parsons KM, "Comparing two alternative methods for sampling small cetaceans for molecular analysis", Mar Mamm Sci, 19, pp.224~231 (2003)
41. Rees HC, "Review : the detection of aquatic animal species using environmental DNA : a review of eDNA as a survey tool in ecology", J Appl Ecol, 51, pp.1450~1459 (2014)
42. Robin ED, "Mitochondrial DNA molecules and virtual number of mitochondria per cell in mammalian cells", J Cell Physiol, 136, pp.507~513 (1988)
43. Shen X, "Complete mitochondrial genome of the sea cucumber Apostichopus japonicus(Echinodermata : Holothuroidea) : the first representative from the subclass Aspidochirotacea with the echinoderm ground pattern", Gene, 439, pp.79~86 (2009)
44. Sigsgaard EE, "Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA", Nat Ecol Evol, 1, pp.0004~ (2016)
45. Sultana GNN, "Mitochondrial DNA and methods for forensic identification", J Forensic Sci Criminal Invest, 9 (2018)
46. Takahara T, "Effects of sample processing on the detection rate of environmental DNA from the common carp(Cyprinus carpio)", Biol Conserv, 183, pp.64~69 (2015)
47. Thalinger B, "A validation scale to determine the readiness of environmental DNA assays for routine species monitoring", Environ DNA, 3, pp.823~836 (2021)
48. Tomaso H, "Comparison of commercial DNA preparation kits for the detection of Brucellae in tissue using quantitative real-time PCR", BMC Infect Dis, 10, pp.100~ (2010)
49. Wai T, "The role of mitochondrial DNA copy number in mammalian fertility", Biol Reprod, 83, pp.52~62 (2010)
50. Xu D, "Understanding the heat shock response in the sea cucumber Apostichopus japonicus, using iTRAQ-based proteomics", Int J Mol Sci, 17, pp.150~ (2016)
51. Yamanaka H, "On-site filtration of water samples for environmental DNA analysis to avoid DNA degradation during transportation", Ecol Res, 31, pp.963~967 (2016)
52. Yang H, "Effects of body size and water temperature on food consumption and growth in the sea cucumber Apostichopus japonicus(Selenka)with special reference to aestivation", Aquac Res, 36, pp.1085~1092 (2005)
53. Yu H, "Regulation of dietary glutamine on the growth, intestinal function, immunity and antioxidant capacity of sea cucumber Apostichopus japonicus(Selenka)", Fish Shellfish Immunol, 50, pp.56~65 (2016)
54. Yunwei D, "Effects of water temperature on growth, respiration and body composition of young sea cucumber Apostichopus japonicus", J Fish Sci China, 12, pp.33~37 (2005)
55. Zipper H, "Mechanisms underlying the impact of humic acids on DNA quantification by SYBR Green I and consequences for the analysis of soils and aquatic sediments", Nucleic Acids Res, 31, pp.e39~ (2003)

관련 논문AI추천