본문 바로가기
KERD
논문KCI 등재

Biochemical Characterization of a GDSL-Motif Esterase from Bacillus sp. K91 with a New Putative Catalytic Mechanism

3

조회

0

다운로드

2

인용

0

참고문헌

키워드

주제분류생물학

초록

The esterase gene Est8 from the thermophilic bacterium Bacillus sp. K91 was cloned and expressed in Escherichia coli. The monomeric enzyme exhibited a theoretical molecular mass of 24.5 kDa and an optimal activity around 50°C at pH 9.0. A model of Est8 was constructed using a hypothetical YxiM precursor structure (2O14_A) from Bacillus subtilis as template. The structure showed an α/β-hydrolase fold and indicated the presence of a typical catalytic triad consisting of Ser-11, Asp-182, and His-185, which were investigated by site-directed replacements coupled with kinetic characterization. Asp-182 and His-185 residues were more critical than the Ser-11 residue in the catalytic activity of Est8. A comparison of the amino acid sequence showed that Est8 could be grouped into the GDSL family and further classified as an SGNH hydrolase. Est8 is a new member of the SGNH hydrolase subfamily and may employ a different catalytic mechanism.

Abstract

The esterase gene Est8 from the thermophilic bacterium Bacillus sp. K91 was cloned and expressed in Escherichia coli. The monomeric enzyme exhibited a theoretical molecular mass of 24.5 kDa and an optimal activity around 50°C at pH 9.0. A model of Est8 was constructed using a hypothetical YxiM precursor structure (2O14_A) from Bacillus subtilis as template. The structure showed an α/β-hydrolase fold and indicated the presence of a typical catalytic triad consisting of Ser-11, Asp-182, and His-185, which were investigated by site-directed replacements coupled with kinetic characterization. Asp-182 and His-185 residues were more critical than the Ser-11 residue in the catalytic activity of Est8. A comparison of the amino acid sequence showed that Est8 could be grouped into the GDSL family and further classified as an SGNH hydrolase. Est8 is a new member of the SGNH hydrolase subfamily and may employ a different catalytic mechanism.

참고문헌 (26)

  1. Akoh CC, "GDSL family of serine esterases", lipases, 2004, pp.43, 534~552
  2. Arnold K, "The SWISSMODEL workspace : a web-based environment for protein structure homology modelling", Bioinformatics, 22, pp.195~201 (2006)
  3. Dalrymple BP, "Three Neocallimastix patriciarum esterases associated with the degradation of complex polysaccharides are members of a new family of hydrolases", Microbiology, 143, pp.2605~2614 (1997)
  4. Gouet P, "ESPript : analysis of multiple sequence alignments in PostScript", Bioinformatics, 15, pp.305~308 (1999)
  5. Hedstrom L., "Serine protease mechanism and specificity", Chem. Rev, 102, pp.4501~4524 (2002)
  6. Hong JK, "Function of a novel GDSL-type pepper lipase gene, CaGLIP1, in disease susceptibility and abiotic stress tolerance", Planta, 227, pp.539~558 (2008)
  7. Hotta Y, "Extremely stable and versatile carboxylesterase from a hyperthermophilic archaeon", Appl. Environ. Microbiol, 68, pp.3925~3931 (2002)
  8. Jaeger KE, "Bacterial biocatalysts:molecular biology, three-dimensional structures, and biotechnological applications of lipases", Annu. Rev. Microbiol, 53, pp.315~351 (1999)
  9. Seung-Bum Kim, "Cloning and Characterization of Thermostable Esterase from Archaeoglobus fulgidus", The Journal of Microbiology, 46(1), pp.100~107 (2008), 한국미생물학회
  10. Laskowski RA, "AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR", J. Biomol. NMR, 8, pp.477~486 (1996)
  11. Lee LC, "Functional role of catalytic triad and oxyanion hole-forming residues on enzyme activity of Escherichia coli thioesterase I", protease I, Biochem. J, pp.2006, 397[DOI]
  12. Lo YC, "Crystal structure of Escherichia coli thioesterase I", protease I, J. Mol. Biol, pp.2003, 330[DOI]
  13. Molgaard A, "Rhamnogalacturonan acetylesterase elucidates the structure and function of a new family of hydrolases", Structure, 8, pp.373~383 (2000)
  14. Morana A, "A carboxylesterase from the hyperthermophilic archaeon Sulfolobus solfataricus : cloning of the gene, characterization of the protein", Gene, 283, pp.107~115 (2002)
  15. Oh IS, "Secretome analysis reveals an Arabidopsis lipase involved in defense against Alternaria brassicicola", Plant Cell, 17, pp.2832~2847 (2005)
  16. Pfeffer JM, "Identification of the first known inhibitors of O-acetylpeptidoglycan esterase : a potential new antibacterial target", Chembiochem, 13, pp.722~731 (2012)
  17. Robertson DL, "Influence of active site and tyrosine modification on the secretion and activity of the Aeromonas hydrophila lipase", acyltransferase, 1994, pp.269, 2146~2150
  18. Rubin B., "Grease pit chemistry exposed", Nat. Struct. Biol, 1, pp.568~572 (1994)
  19. Schwede T, "SWISSMODEL:An automated protein homology-modeling server", Nucleic Acids Res, 31, pp.3381~3385 (2003)
  20. Shaw JF, "Nucleotide sequence of a novel arylesterase gene from Vibro mimicus and characterization of the enzyme expressed in Escherichia coli", Biochem. J, 298, pp.675~680 (1994)
  21. Thompson JD, "CLUSTAL W:improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice", Nucleic Acids Res, 22, pp.4673~4680 (1994)
  22. Upton C, "A new family of lipolytic enzymes?", Trends Biochem. Sci, 20, pp.178~179 (1995)
  23. Volokita M, "Combining comparative sequence and genomic data to ascertain phylogenetic relationships and explore the evolution of the large GDSL-lipase family in land plants", Mol. Biol. Evol, 28, pp.551~565 (2011)
  24. Weadge JT, "Identification and characterization of O-acetylpeptidoglycan esterase : a novel enzyme discovered in Neisseria gonorrhoeae", Biochemistry, 45, pp.839~851 (2006)
  25. Yang C, "Surface display of MPH on Pseudomonas putida JS444 using ice nucleation protein and its application in detoxification of organophosphates", Biotechnol. Bioeng, 99, pp.30~37 (2008)
  26. Zaide G, "Biochemical characterization and identification of catalytic residues in alpha-glucuronidase from Bacillus stearothermophilus T-6", Eur. J. Biochem, 268, pp.3006~3016 (2001)

관련 논문AI추천

Identification and Characterization of a Novel Thermostable GDSL-Type Lipase from Geobacillus thermocatenulatus김지혜, 문금옥, 이아름, 조은혜, 차재호한국미생물·생명공학회 · Journal of Microbiology and Biotechnology2021 · 제31권 제3호A Novel Esterase from a Marine Metagenomic Library Exhibiting Salt Tolerance AbilityHui Peng, Jingjing Li, Quan Wang, Wei Fang, Xuecheng Zhang, Yazhong Xiao, Zeming Fang한국미생물·생명공학회 · Journal of Microbiology and Biotechnology2014 · 제24권 제6호Identification of amino acids related to catalytic function of Sulfolobus solfataricus P1 carboxylesterase by site-directed mutagenesis and molecular modeling박영준, 윤성진, 이예나, 이희봉, 최윤호생화학분자생물학회 · BMB Reports2016 · 제49권 제6호Molecular Cloning and Characterization of a Novel Cold-Adapted Family VIII Esterase from a Biogas Slurry Metagenomic LibraryJianguang Sun, Junlian Gao, Mei Yuan, Tianlei Qiu, Xiaojie Cheng, Xuming Wang한국미생물·생명공학회 · Journal of Microbiology and Biotechnology2014 · 제24권 제11호Molecular Cloning, Purification, and Characterization of a Cold-Adapted Esterase from Photobacterium sp. MA1-3김동근, 김영옥, 남보혜, 안철민, 이상주, 지영주, 허유리한국수산과학회 · Fisheries and Aquatic Sciences2013 · 제16권 제4호Cloning, Expression, and Characterization of GDSL-Type Lipolytic Enzyme Genes from Epidermidibacterium keratini EPI-7 Isolated from Human SkinBaek Seyeol, Bae Seunghee, Cho Suhyeon, Jeong Seok-Yun, Jeong Sugyeong, Kang Seunghyun, Kim Gayoung, Park Seokmuk, Shin Hee-Jae, Yun Seok Kyun한국미생물·생명공학회 · Journal of Microbiology and Biotechnology2025 · 제35권

이 간행물의 다른 논문 (11건)