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Identification of amino acids related to catalytic function of Sulfolobus solfataricus P1 carboxylesterase by site-directed mutagenesis and molecular modeling

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초록

The archaeon Sulfolobus solfataricus P1 carboxylesterase is a thermostable enzyme with a molecular mass of 33.5 kDa belonging to the mammalian hormone-sensitive lipase (HSL) family. In our previous study, we purified the enzyme and suggested the expected amino acids related to its catalysis by chemical modification and a sequence homology search. For further validating these amino acids in this study, we modified them using site-directed mutagenesis and examined the activity of the mutant enzymes using spectrophotometric analysis and then estimated by homology modeling and fluorescence analysis. As a result, it was identified that Ser151, Asp244, and His274 consist of a catalytic triad, and Gly80, Gly81, and Ala152 compose an oxyanion hole of the enzyme. In addition, it was also determined that the cysteine residues are located near the active site or at the positions inducing any conformational changes of the enzyme by their replacement with serine residues.

Abstract

The archaeon Sulfolobus solfataricus P1 carboxylesterase is a thermostable enzyme with a molecular mass of 33.5 kDa belonging to the mammalian hormone-sensitive lipase (HSL) family. In our previous study, we purified the enzyme and suggested the expected amino acids related to its catalysis by chemical modification and a sequence homology search. For further validating these amino acids in this study, we modified them using site-directed mutagenesis and examined the activity of the mutant enzymes using spectrophotometric analysis and then estimated by homology modeling and fluorescence analysis. As a result, it was identified that Ser151, Asp244, and His274 consist of a catalytic triad, and Gly80, Gly81, and Ala152 compose an oxyanion hole of the enzyme. In addition, it was also determined that the cysteine residues are located near the active site or at the positions inducing any conformational changes of the enzyme by their replacement with serine residues.

참고문헌 (23)

  1. Okuda H, "A study of enzymes Vol. 2", pp.563~577 (1990), CRC press
  2. Jaeger KE, "Bacterial biocatalysts: molecular biology, threedimensional structures, and biotechnological applications of lipases", Annu Rev Microbiol, 53, pp.315~351 (1999)
  3. Arpigny JL, "Bacterial lipolytic enzymes:classification, properties", Biochem J, 343, pp.177~183 (1999)
  4. Rao L, "A thermostable esterase from Thermoanaerobacter tengcongensis opening up a new family of bacterial lipolytic enzymes", Biochim Biophys Acta, 1814, pp.1695~1702 (2011)
  5. Holm C, "Molecular mechanisms regulating hormone-sensitive lipase, lipolysis", Annu Rev Nutr, 20, pp.365~393 (2000)
  6. Holmquist M, "Alpha", beta-hydrolase fold enzymes:structures, functions, mechanisms, 2000, pp.1, 209~235
  7. Schrag JD, "Lipases, alpha", beta hydrolase fold, 1997, pp.284, 85~107
  8. De Simone G, "The crystal structure of a hyperthermophilic carboxylesterase from the archaeon Archaeoglobus fulgidus", J Mol Biol, 314, pp.507~518 (2001)
  9. Byun JS, "Crystal structure of hyperthermophilic esterase EstE1, the relationship between its dimerization, thermostability properties", BMC Struct Biol, 7(47), pp.1~11 (2007)
  10. Palm GJ, "The crystal structure of an esterase from the hyperthermophilic microorganism Pyrobaculum calidifontis VA1 explains its enantioselectivity", Appl Microbiol Biotechnol, 91, pp.1061~1072 (2011)
  11. Angkawidjaja C, "Structure, stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobus tokodaii", FEBS J, 279, pp.3071~3084 (2012)
  12. Panda T, "Production, applications of esterases", Appl Microbiol Biotechnol, 67, pp.160~169 (2005)
  13. Brock TD, "Sulfolobus : a new genus of sulfur oxidizing bacteria living at low pH, high temperature", Arch Microbiol, 84, pp.54~68 (1972)
  14. Park Y, "A carboxylesterase from the thermoacidophilic archaeon Sulfolobus solfataricus P1;purification, characterization, , expression", Biochim Biophys Acta, 1760, pp.820~828 (2006)
  15. Nam JK, "Cloning, expression,, characterization of a novel thermostable esterase from the archaeon Sulfolobus solfataricus P1", J Mol Catal B: Enzymatic, 94, pp.95~103 (2013)
  16. Park YJ, "A novel thermostable arylesterase from the archaeon Sulfolobus solfataricus P1:purification, characterization, and expression", J Bacteriol, 190, pp.8086~8095 (2008)
  17. Pathak D, "Thiol protease-like active site found in the enzyme dienelactone hydrolase:localization using biochemical, genetic, and structural tools", Proteins, 9, pp.267~279 (1991)
  18. Park YJ, "A novel dienelactone hydrolase from the thermoacidophilic archaeon Sulfolobus solfataricus P1: Purification, characterization, and expression", Biochim Biophys Acta, 1800, pp.1164~1172 (2010)
  19. Sambrook J, "Molecular Cloning: A Laboratory Manual" (1989), Cold Spring Harbor Laboratory Press
  20. Yuqi Qin, "Asn124 of Cel5A from Hypocrea jecorina not only provides the N-glycosylation site but is also essential in maintaining enzymatic activity", BMB Reports, 47(5), pp.256~261 (2014), 생화학분자생물학회
  21. 임채진, "Growth hormone-releasing peptide-biotin conjugate stimulates myocytes differentiation through insulin-like growth factor-1 and collagen type I", BMB Reports, 48(9), pp.501~506 (2015), 생화학분자생물학회
  22. Roy A, "I-TASSER : a unified platform for automated protein structure, function prediction", Nat Protoc, 5, pp.725~738 (2010)
  23. Zhang Y, "I-TASSER server for protein 3D structure prediction", BMC Bioinformatics, 9, pp.40~ (2008)

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