Flavobacterium nakdongensis sp. nov., Isolated from Fresh Water during the Cyanobacterial Bloom Period
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A novel Gram-negative bacterial strain, 20NA77.7T , was isolated from fresh water of the Nakdong River. Strain 20NA77.7T shared the highest similarity with Flavobacterium indicum GPTSA100-9T (97.91%) and Flavobacterium urocaniciphilum DSM 27078T (96.24%) in the 16S rRNA gene sequence. The digital DNA–DNA hybridization and average nucleotide identity values for strain 20NA77.7T with Flavobacterium species were below 20.8% and 77.33%, respectively. The major fatty acids of strain 20NA77.7T were identified as iso-C15:0, iso-C16:0, iso-C15:1 G, anteiso-C15:0, iso-C15:0 3OH, and isoC16:0 3OH. Strain 20NA77.7T contained phosphatidylethanolamine, one unidentified aminolipid, and three unidentified lipids as polar lipids and menaquinone-6 as menaquinone. The polyphasic evidence supports the classification of strain 20NA77.7T as a novel species belonging to the genus Flavobacterium, for which the name Flavobacterium nakdongensis is proposed. The type strain is 20NA77.7T (= KCTC 102000T = LMG 33137T ).
Abstract
A novel Gram-negative bacterial strain, 20NA77.7T , was isolated from fresh water of the Nakdong River. Strain 20NA77.7T shared the highest similarity with Flavobacterium indicum GPTSA100-9T (97.91%) and Flavobacterium urocaniciphilum DSM 27078T (96.24%) in the 16S rRNA gene sequence. The digital DNA–DNA hybridization and average nucleotide identity values for strain 20NA77.7T with Flavobacterium species were below 20.8% and 77.33%, respectively. The major fatty acids of strain 20NA77.7T were identified as iso-C15:0, iso-C16:0, iso-C15:1 G, anteiso-C15:0, iso-C15:0 3OH, and isoC16:0 3OH. Strain 20NA77.7T contained phosphatidylethanolamine, one unidentified aminolipid, and three unidentified lipids as polar lipids and menaquinone-6 as menaquinone. The polyphasic evidence supports the classification of strain 20NA77.7T as a novel species belonging to the genus Flavobacterium, for which the name Flavobacterium nakdongensis is proposed. The type strain is 20NA77.7T (= KCTC 102000T = LMG 33137T ).
참고문헌 (48)
- Bergey D, "Bergey`s manual of Determinative Bacteriology", pp.97~117 (1923), Williams and Wilkins
- Parte AC, "LPSN – List of Prokaryotic names with Standing in Nomenclature (bacterio.net), 20 years on", Int. J. Syst. Evol. Microbiol, 68, pp.1825~1829 (2018)
- Le VV, "Flavobacterium inviolabile sp. nov. isolated from stream water", Arch. Microbiol, 203, pp.3633~3639 (2021)
- Lin SY, "Description of Flavobacterium agricola sp. nov., an auxin producing bacterium isolated from paddy field", Antonie Van Leeuwenhoek, 116, pp.1345~1357 (2023)
- Kitahara K, "Flavobacterium okayamense sp. nov. isolated from surface seawater", Arch. Microbiol, 205, pp.346~ (2023)
- Wu N, "Flavobacterium sedimenticola sp. nov., isolated from sediment", Int. J. Syst. Evol. Microbiol, 73, pp.006180~ (2023)
- Máté R, "Flavobacterium hungaricum sp. nov. a novel soil inhabitant, cellulolytic bacterium isolated from plough field", Arch. Microbiol, 204, pp.301~ (2022)
- LaFrentz BR, "The fish pathogen Flavobacterium columnare represents four distinct species: Flavobacterium columnare, Flavobacterium covae sp. nov., Flavobacterium davisiisp. nov. and Flavobacterium oreochromis sp. nov., and emended description of Flavobacterium columnare", Syst. Appl. Microbiol, 45, pp.126293~ (2022)
- Chaudhary DK, "Flavobacterium petrolei sp. nov., a novel psychrophilic, diesel-degrading bacterium isolated from oil-contaminated Arctic soil", Sci. Rep, 9, pp.4134~ (2019)
- Chhetri G, "Flavobacterium baculatum sp. nov., a carotenoid and flexirubin-type pigment producing species isolated from flooded paddy field", Int. J. Syst. Evol. Microbiol, 71, pp.004736~ (2021)
- Bullerjahn GS, "Physiology and molecular biology of aquatic cyanobacteria", Front. Microbiol, 5, pp.359~ (2014)
- Svirčev Z, "A review and assessment of cyanobacterial toxins as cardiovascular health hazards", Arch. Toxicol, 96, pp.2829~2863 (2022)
- Le VV, "Microcystis colony formation : extracellular polymeric substance, associated microorganisms, and its application", Bioresour. Technol, 360, pp.127610~ (2022)
- Sun R, "Microorganisms-based methods for harmful algal blooms control : a review", Bioresour. Technol, 248, pp.12~20 (2018)
- Le VV, "Response of particle-attached and free-living bacterial communities to Microcystis blooms", Appl. Microbiol. Biotechnol, 108, pp.42~ (2024)
- Le VV, "Dynamic response of bacterial communities to Microcystis blooms : a three-year study", Sci. Total Environ, 902, pp.165888~ (2023)
- Kim M, "Seasonal dynamics of the bacterial communities associated with cyanobacterial blooms in the Han River", Environ. Pollut, 266, pp.115198~ (2020)
- Saha P, "Flavobacterium indicum sp. nov., isolated from warm spring water in Assam", India. Int. J. Syst. Evol. Microbiol, 56, pp.2617~2621 (2006)
- Fujii D, "Flavobacterium longum sp. nov. and Flavobacterium urocaniciphilum sp. nov., isolated from a wastewater treatment plant, and emended descriptions of Flavobacterium caeni and Flavobacterium terrigena", Int. J. Syst. Evol. Microbiol, 64, pp.1488~1494 (2014)
- Le VV, "Caenimonas aquaedulcis sp. nov., isolated from freshwater of Daechung Reservoir during Microcystis bloom", J. Microbiol. Biotechnol, 32, pp.575~581 (2022)
- Yoon SH, "Introducing EzBioCloud : a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies", Int. J. Syst. Evol. Microbiol, 67, pp.1613~1617 (2017)
- Tamura K, "MEGA11 : molecular evolutionary genetics analysis version 11", Mol. Biol. Evol, 38, pp.3022~3027 (2021)
- Saitou N, "The neighbor-joining method : a new method for reconstructing phylogenetic trees", Mol. Biol. Evol, 4, pp.406~425 (1987)
- Nei M, "The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small", Proc. Natl. Acad. Sci. USA, 95, pp.12390~12397 (1998)
- Felsenstein J, "Evolutionary trees from DNA sequences : a maximum likelihood approach", J. Mol. Evol, 17, pp.368~376 (1981)
- Kimura M, "The Neutral Theory of Molecular Evolution" (1983), Cambridge University Press
- Le VV, "Genomic insights into Paucibacter aquatile DH15, a cyanobactericidal bacterium, and comparative genomics of the genus Paucibacter", J. Microbiol. Biotechnol, 33, pp.1615~1624 (2023)
- Lee I, "ContEst16S : an algorithm that identifies contaminated prokaryotic genomes using 16S RNA gene sequences", Int. J. Syst. Evol. Microbiol, 67, pp.2053~2057 (2017)
- Seemann T, "Prokka : rapid prokaryotic genome annotation", Bioinformatics, 30, pp.2068~2069 (2014)
- Aziz RK, "The RAST server : rapid annotations using subsystems technology", BMC Genomics, 9, pp.75~ (2008)
- Tatusova T, "NCBI prokaryotic genome annotation pipeline", Nucleic Acids Res, 44, pp.6614~6624 (2016)
- Yoon SH, "A large-scale evaluation of algorithms to calculate average nucleotide identity", Antonie Van Leeuwenhoek, 110, pp.1281~1286 (2017)
- Meier-Kolthoff JP, "Genome sequence-based species delimitation with confidence intervals and improved distance functions", BMC Bioinformatics, 14, pp.60~ (2013)
- Meier-Kolthoff JP, "TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy", Nat. Commun, 10, pp.2182~ (2019)
- Blin K, "antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation", Nucleic Acids Res, 51, pp.W46~W50 (2023)
- Zheng J, "dbCAN3 : automated carbohydrate-active enzyme and substrate annotation", Nucleic Acids Res, 51, pp.W115~W121 (2023)
- Le VV, "Mucilaginibacter aquariorum sp. nov., isolated from fresh water", J. Microbiol. Biotechnol, 32, pp.1553~1560 (2022)
- Smibert RM, "Methods for General and Molecular Bacteriology", pp.607~654 (1994), American Society for Microbiology
- Bernardet JF, "Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family", Int. J. Syst. Evol. Microbiol, 52, pp.1049~1070 (2002)
- Tamaoka J, "Analysis of bacterial menaquinone mixtures by reverse-phase high-performance liquid chromatography", Methods Enzymol, 123, pp.251~256 (1986)
- Kim M, "Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes", Int. J. Syst. Evol. Microbiol, 64, pp.346~351 (2014)
- Paul R, "Complex organic matter degradation by secondary consumers in chemolithoautotrophy-based subsurface geothermal ecosystems", PLoS One, 18, pp.e0281277~ (2023)
- Wang K, "Co-occurring microorganisms regulate the succession of cyanobacterial harmful algal blooms", Environ. Pollut, 288, pp.117682~ (2021)
- Li X, "Dynamic patterns of carbohydrate metabolism genes in bacterioplankton during marine algal blooms", Microbiol. Res, 286, pp.127785~ (2024)
- Watanabe F, "Vitamin B12 sources and microbial interaction", Exp. Biol. Med, 243, pp.148~158 (2018)
- Qiu GW, "Iron transport in cyanobacteria-from molecules to communities", Trends Microbiol, 30, pp.229~240 (2022)
- Xu K, "Effects of iron deficiency on the growth and photosynthesis of three bloom-forming cyanobacterial species isolated from Lake Taihu", Phycol. Res, 65, pp.151~159 (2017)
- Zhang R, "Flavobacterium cerinum sp. nov., isolated from Arctic tundra soil", Int. J. Syst. Evol. Microbiol, 69, pp.3745~3750 (2019)
