Complete Mitochondrial Genome and Phylogenetic Analysis for the Korean Field Mouse Apodemus peninsulae Found on Baengnyeong Island in South Korea
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The Korean field mouse, Apodemus peninsulae mitochondrial genome has previously been reported for mice obtained from mainland Korea and China. In this investigation the complete mitochondrial genome sequence for a mouse obtained from Baengnyeong Island (BI) in South Korea was determined using high-throughput whole-genome sequencing for the first time. The circular genome was determined to be 16,268 bp in length. It was found to be composed of a typical complement gene that encodes 13 protein subunits of enzymes involved in oxidative phosphorylation, two ribosomal RNAs, 22 transfer RNAs, and one control region. Phylogenetic analysis involved 13 amino acid sequences and demonstrated that the A. peninsulae genome from BI was more closely grouped with two Korean samples (HQ660074 and JN546584) than the Chinese (KP671850) sample. This study verified the evolutionary status of A. peninsulae inhabiting the BI at the molecular level, and could be a significant supplement to the genetic background.
Abstract
The Korean field mouse, Apodemus peninsulae mitochondrial genome has previously been reported for mice obtained from mainland Korea and China. In this investigation the complete mitochondrial genome sequence for a mouse obtained from Baengnyeong Island (BI) in South Korea was determined using high-throughput whole-genome sequencing for the first time. The circular genome was determined to be 16,268 bp in length. It was found to be composed of a typical complement gene that encodes 13 protein subunits of enzymes involved in oxidative phosphorylation, two ribosomal RNAs, 22 transfer RNAs, and one control region. Phylogenetic analysis involved 13 amino acid sequences and demonstrated that the A. peninsulae genome from BI was more closely grouped with two Korean samples (HQ660074 and JN546584) than the Chinese (KP671850) sample. This study verified the evolutionary status of A. peninsulae inhabiting the BI at the molecular level, and could be a significant supplement to the genetic background.
참고문헌 (19)
- Batsaikhan, A., "Apodemus peninsulae. The IUCN Red List of Threatened Species 2016: e.T1899A115058828", International Union for Conservation of Nature and Natural Resources, ~ (2016)
- 조민희, "한국 황해 백령도 주변해역 후 제4기 퇴적작용", 지구물리와 물리탐사, 16(3), pp.145~153 (2013), 한국지구물리.물리탐사학회[DOI]
- Christoph Hahn, "Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach", Nucleic Acids Research, 41(13), pp.e129~e129 (2013), Oxford University Press (OUP)[DOI]
- Mi Gyung Jeon, "Phylogenetic analysis of the complete mitochondrial genome of the Korean field mouse <i>Apodemus peninsulae<", i> (Rodentia, Murinae) from China, 2015, pp.27(4), 2408~2409[DOI]
- Jo, Y. S., "Mammals of Korea" (2018), National Institute of Biological Resources
- 강종현, "백령도에서 검은이마직박구리(Pycnonotus sinensis)의 번식 및 월동 현황", 한국조류학회지, 19(3), pp.237~241 (2012), 한국조류학회II
- Kim, H. R., "The complete mitochondrial genome of the Korean field mouse Apodemus peninsulae (Rodentia, Murinae) from Korea", Mitochondrial DNA, 22, pp.97~98 (2011)[DOI]
- Laslett, D., "ARWEN : a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences", Bioinformatics, 24, pp.172~175 (2008)[DOI]
- Lee, E. J., "Characteristics of small rodent populations in post-fire silvicultural management stands within pine forest", Forest Ecology and Management, 255, pp.1418~1422 (2008)[DOI]
- Lee, E. J., "Seasonal movements and home range sizes of Korean field mouse Apodemus peninsulae in unburned and post-fire pine planted stands within a pine forest", Journal of Animal and Veterinary Advances, 11, pp.3834~3839 (2012)[DOI]
- Lu, J., "Food hoarding behaviour of large field mouse Apodemus peninsulae", Acta Theriologica, 50, pp.51~58 (2005)[DOI]
- Guanliang Meng, "MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization", Nucleic Acids Research, 47(11), pp.e63~e63 (2019), Oxford University Press (OUP)[DOI]
- Musser, G. G., "Mammal Species of the World: A Taxonomic and Geographic Reference", pp.1189~1531 (2005), Johns Hopkins University Press
- Oh, D. J., "The mitochondrial genome of Apodemus peninsulae(Rodentia, Muridae)", Mitochondrial DNA, 22, pp.99~101 (2011)[DOI]
- Park, C. D., "Herpetofauna in Socheong, Daecheong and Baengnyeong islands, Korea", Korean Journal of Herpetology, 10, pp.1~7 (2019)
- Park, G., "3rd National Natural Environment Survey" (2007), Ministry of Environment
- Won, C., "History and current status of mammals of the Korean Peninsula", Mammal Review, 29, pp.3~36 (1999)[DOI]
- Wyman, S. K., "Automatic annotation of organellar genomes with DOGMA", Bioinformatics, 20, pp.3252~3255 (2004)[DOI]
- 윤명희, "Biogeography, Genetic Structure, and Speciation in the Striped Field Mouse, Apodemus agarius, in Southern Korea", Genes & Genomics, 26(1), pp.15~28 (2004), 한국유전학회