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Conserved Regions in Mitochondrial Genome Sequences of Small Mammals in Korea

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초록

Comparative sequence analyses were conducted on complete mtDNA sequences from four small mammal species in Korea and revealed the presence of 30 well conserved sequences in various regions of the complete mtDNA sequences. The conserved sequences were found in 9 regions in protein coding genes, 10 regions in tRNA genes, 10 in rRNA genes, one region in replication origin and 2 regions in D loop. They could be used to design primers for amplifying complete mtDNA sequences of small mammals.

Abstract

Comparative sequence analyses were conducted on complete mtDNA sequences from four small mammal species in Korea and revealed the presence of 30 well conserved sequences in various regions of the complete mtDNA sequences. The conserved sequences were found in 9 regions in protein coding genes, 10 regions in tRNA genes, 10 in rRNA genes, one region in replication origin and 2 regions in D loop. They could be used to design primers for amplifying complete mtDNA sequences of small mammals.

참고문헌 (22)

  1. Folmer O, "DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates", Mol Mar Biol Biotechnol, 3, pp.294~299 (1994)
  2. Hebert PD, "Biological identifications through DNA barcodes", Proc Biol Sci, 270, pp.313~321 (2003)
  3. Hebert PD, "Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species", Proc Biol Sci, 270(Suppl 1), pp.S96~S99 (2003)
  4. Hebert PD, "Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator", Proc Natl Acad Sci U S A, 101, pp.14812~14817 (2004)
  5. Hebert PD, "Identification of Birds through DNA Barcodes", PLoS Biol, 2, pp.e312~ (2004)
  6. Kim HR, "The complete mitochondrial genome of the Korean field mouse Apodemus peninsulae (Rodentia, Murinae) from Korea", Mitochondrial DNA, 22, pp.97~98 (2011)
  7. Janke A, "The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles)", Mol Biol Evol, 14, pp.1266~1272 (1997)
  8. Kim HR, "The complete mitochondrial genome of the Korean red-backed vole, Myodes regulus (Rodentia, Murinae) from Korea", Mitochondrial DNA, 23, pp.148~150 (2012)
  9. Kim HR, "The complete mitochondrial genome of the striped field mouse, Apodemus agrarius (Rodentia, Murinae) from Korea", Mitochondrial DNA, 23, pp.145~147 (2012)
  10. Kim KS, "The complete nucleotide sequence of the domestic dog (Canis familiaris) mitochondrial genome", Mol Phylogenet Evol, 10, pp.210~220 (1998)
  11. Kocher TD, "Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers", Proc Natl Acad Sci U S A, 86, pp.6196~6200 (1989)
  12. 최재천, "Low resolution of mitochondrial COI barcodes for identifying species of the genus Larus (Charadriiformes: Laridae)", MITOCHONDRIAL DNA, 23(2), pp.157~166, INFORMA HEALTHCARE
  13. Murphy NP, "Phylogenetic reconstruction of the wolf spiders (Araneae: Lycosidae) using sequences from the 12S rRNA, 28S rRNA, and NADH1 genes: implications for classification, biogeography, and the evolution of web building behavior", Mol Phylogenet Evol, 38, pp.583~602 (2006)
  14. Nikaido M, "Monophyletic origin of the order chiroptera and its phylogenetic position among mammalia, as inferred from the complete sequence of the mitochondrial DNA of a Japanese megabat, the Ryukyu flying fox (Pteropus dasymallus)", J Mol Evol, 51, pp.318~328 (2000)
  15. Noller HF, "Studies on the structure and function of 16S ribosomal RNA using structure-specific chemical probes", Proc Int Symp Biomol Struct Interactions, Suppl J Biosci, 8, pp.747~755 (1985)
  16. Pacheco MA, "Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders", Mol Biol Evol, 28, pp.1927~1942 (2011)
  17. Phillips MJ, "The root of the mammalian tree inferred from whole mitochondrial genomes", Mol Phylogenet Evol, 28, pp.171~185 (2003)
  18. Sorenson MD, "Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates", Mol Phylogenet Evol, 12, pp.105~114 (1999)
  19. Thompson JD, "The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools", Nucleic Acids Res, 25, pp.4876~4882 (1997)
  20. Tobe SS, "Reconstructing mammalian phylogenies: a detailed comparison of the cytochrome B and cytochrome oxidase subunit I mitochondrial genes", PLoS One, 5, pp.e14156~ (2010)
  21. Tzeng CS, "The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: conservation and variations among vertebrates", Nucleic Acids Res, 20, pp.4853~4858 (1992)
  22. Yoon KB, "The complete mitochondrial genome of the greater horseshoe bat subspecies, Rhinolophus ferrumequinum korai (Chiroptera: Rhinolophidae)", Mitochondrial DNA, 22, pp.102~104 (2011)

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