본문 바로가기
KERD
논문KCI 등재

Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria

2

조회

0

다운로드

1

인용

0

참고문헌

키워드

주제분류생물학

초록

Here we describe indigenous prokaryotic species in Korea, a total of 42 bacterial strains affiliated to the class Alphaproteobacteria isolated from various environmental samples: fermented vinegar, sea water, beach sand, fresh water, salt flats, moss, algae, activated sludge, and soil. From the high 16S rRNA gene sequence similarity (>98.7%) and formation of a robust phylogenetic clade with the closest species, it was determined that each strain belonged to predefined bacterial species. There is no official report that these 42 species included in Alphaproteobacteria in Korea: 15 species of 6 genera in the order Rhodospirillales, 12 species of 10 genera in the order Rhizobiales, 10 species of 8 genera in the order Rhodobacterales, 4 species of 4 genera in the order Sphingomonadales and 1 species of 1 genus in the order Caulobacterales. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are also described in the species description section.

Abstract

Here we describe indigenous prokaryotic species in Korea, a total of 42 bacterial strains affiliated to the class Alphaproteobacteria isolated from various environmental samples: fermented vinegar, sea water, beach sand, fresh water, salt flats, moss, algae, activated sludge, and soil. From the high 16S rRNA gene sequence similarity (>98.7%) and formation of a robust phylogenetic clade with the closest species, it was determined that each strain belonged to predefined bacterial species. There is no official report that these 42 species included in Alphaproteobacteria in Korea: 15 species of 6 genera in the order Rhodospirillales, 12 species of 10 genera in the order Rhizobiales, 10 species of 8 genera in the order Rhodobacterales, 4 species of 4 genera in the order Sphingomonadales and 1 species of 1 genus in the order Caulobacterales. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are also described in the species description section.

참고문헌 (19)

  1. Brenner, D. J., "Bergeyʼs Manual of Systematic Bacteriology 2C", pp.1388~ (2005)
  2. Buchan, A., "Overview of the marine Roseobacter lineage", Appl. Environ. Microbiol, 71, pp.5665~5677 (2005)
  3. Chernikova, T., "Monaibacterium marinum, gen. nov, sp. nov, a new member of the Alphaproteobacteria isolated from seawater of Menai Straits, Wales, UK", Int. J. Syst. Evol. Microbiol, 67, pp.3310~3317 (2017)
  4. Chilton, M. D., "Stable incorporation of plasmid DNA into higher plant cells: the molecular basis of crown gall tumorigenesis", Cell, 11(2), pp.263~271 (1977)
  5. Euzéby, J. P., "Alphaproteobacteria", List of Prokaryotic names with Standing in Nomenclature, ~ (2011)
  6. Felsenstein, J, "Confidence limit on phylogenies: an approach using the bootstrap", Evolution, 39, pp.783~791 (1985)
  7. Fitch, W. M, "Toward defining the course of evolution:minimum change for a specific tree topology", Syst. Zool, 20, pp.406~416 (1971)
  8. Hall, T. A, "BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95", 98, Nucleic Acids Symp. Ser, pp.1999, 41[DOI]
  9. Kimura, M., "The Neutral Theory of Molecular Evolution" (1983), Cambridge University Press
  10. Lane, D. J., "Nucleic Acid Techniques in Bacterial Systematics" (1991), Wiley
  11. Matteo, P. F., "New rRNA gene-based phylogenies of the Alphaproteobacteria provide perspective on major Groups, mitochondrial ancestry and mhylogenetic Instability", PLoS One, 8(12), pp.e83383~ (2013)
  12. Oren, A, "Then and now: a systematic review of the systematics of prokaryotes in the last 80years", Antonie van Leeuwenhoek, 106(1), pp.43~56 (2014)
  13. Parte, A. C., "LPSN-list of prokaryotic names with standing in nomenclature", Nucleic Acids Research, 42, pp.D613~D616 (2014)
  14. Saitou, N, "The neighbor-joining method: a new method for reconstructing phylogenetic trees", Molecular Biology and Evolution, 4(4), pp.406~425 (1987)
  15. Tamura, K., "MEGA6: molecular evolutionary genetics analysis version 6.0", Mol. Biol. Evol, 30, pp.2725~2729 (2013)
  16. Thompson, J. D., "The CLUSTAL_X windows interface:flexible strategies for multiple sequence alignment aided by quality analysis tools", Nucleic Acids Res, 25, pp.4876~4882 (1997)
  17. Wagner-Döbler, I, "Environmental biology of the marine Roseobacter lineage", Annu. Rev. Microbiol, 60, pp.255~280 (2006)
  18. Williams, K. P., "A robust species tree for the Alphaproteobacteria", Journal of Bacteriology, 189(13), pp.4578~4586 (2007)
  19. Yoon, S. H., "Introducing EzBioCloud: A taxonomically united database of 16S rRNA and whole genome assemblies", Int. J. Syst. Evol. Microbiol, 67, pp.1613~1617 (2017)

관련 논문AI추천

Description of 39 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria김승범, 배진우, 성치남, 윤정훈, 임완택, 장광엽, 전체옥, 조기성, 조장천, 주베르국립생물자원관 · Journal of Species Research2017 · 제6권 제2호A report of 42 unrecorded bacterial species belonging to the Alphaproteobacteria in Korea김승범, 배진우, 성치남, 윤정훈, 임완택, 장광엽, 전체옥, 조기성, 조장천, 진현미, 차창준국립생물자원관 · Journal of Species Research2016 · 제5권 제2호A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea김경현, 김승범, 배진우, 성치남, 윤정훈, 임완택, 장광엽, 전체옥, 조기성, 조장천, 차창준국립생물자원관 · Journal of Species Research2017 · 제6권 제2호A report of 29 unrecorded bacterial species in Korea, belonging to the Alphaproteobacteria김승범, 성치남, CHANG-JUN CHA, Che Ok Jeon, Jang-Cheon Cho, Jin-Woo Bae, Jongsik Chun, Jung-Hoon Yoon, Kiseong Joh, Kwang-Yeop Jahng, Qingmei Liu, Wan-Taek Im국립생물자원관 · Journal of Species Research2015 · 제4권 제2호A report on 24 unrecorded bacterial species of Korea isolated in 2016, belonging to the orders Rhizobiales and Sphingomonadales in the class Alphaproteobacteria김승범, 김원용, 이순동, 임완택, 전체옥, 정요찬, 조기성, 조장천, 차창준국립생물자원관 · Journal of Species Research2018 · 제7권 제1호A report of 35 unrecorded bacterial species belonging to the classes Alphaproteobacteria and Betaproteobacteria in Korea김명겸, 김승범, 김원용, 성치남, 윤정훈, 임완택, 전체옥, 정혜수, 조기성, 차창준국립생물자원관 · Journal of Species Research2021 · 제10권 제1호

이 간행물의 다른 논문 (8건)