본문 바로가기
KERD
논문KCI 등재

A report of 29 unrecorded bacterial species in Korea, belonging to the Alphaproteobacteria

4

조회

0

다운로드

0

인용

0

참고문헌

키워드

주제분류생물학

초록

assigned to the classes Alphaproteobacteria were isolated from various environmental samples collected from plant root, ginseng soil, forest soil, marsh, mud flat, freshwater and seawater. From the high 16S rRNA gene sequence similarity (>99.1%) and formation of a robust phylogenetic clade with the closest species, it was determined that each strain belonged to each independent and predefined bacterial species. There is no official report that these 29 species included in Alphaproteobacteria is have been described in Korea; therefore 14 species of 9 genera in the order Rhizobiales, 7 species of 6 genera in the order Sphingomonadales and 4 species of 2 genera in the order Caulobacterales and 3 species in the order Rhodobacterales and 1 species in the order Rhodospirillales found in Korea. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are also described in the species description section.

Abstract

assigned to the classes Alphaproteobacteria were isolated from various environmental samples collected from plant root, ginseng soil, forest soil, marsh, mud flat, freshwater and seawater. From the high 16S rRNA gene sequence similarity (>99.1%) and formation of a robust phylogenetic clade with the closest species, it was determined that each strain belonged to each independent and predefined bacterial species. There is no official report that these 29 species included in Alphaproteobacteria is have been described in Korea; therefore 14 species of 9 genera in the order Rhizobiales, 7 species of 6 genera in the order Sphingomonadales and 4 species of 2 genera in the order Caulobacterales and 3 species in the order Rhodobacterales and 1 species in the order Rhodospirillales found in Korea. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are also described in the species description section.

참고문헌 (14)

  1. Bazylinski, D.A, "Magnetococcus marinus gen. nov., sp. nov., a marine, magnetotactic bacterium that represents a novel lineage(Magnetococcaceae fam. nov. ; Magnetococcales ord. nov. )at the base of the Alphaproteobacteria", International Journal of Systematic and Evolutionary Microbiology, 63, pp.801~808 (2012)
  2. Chilton, M.D., "Stable incorporation of plasmid DNA into higher plant cells: the molecular basis of crown gall tumorigenesis", Cell, 11(2), pp.263~271 (1977)
  3. Felsenstein, J., "Confidence limit on phylogenies : an approach using the bootstrap", Evolution, 39, pp.783~791 (1985)
  4. Fitch, W.M., "Toward defining the course of evolution:minimum change for a specific tree topology", Syst. Zool, 20, pp.406~416 (1971)
  5. Hall, T.A., "BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95", 98, Nucleic Acids Symp. Ser, pp.1999, 41[DOI]
  6. Kim, O.S., "Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species", International Journal of Systematic and Evolutionary Microbiology, 62(3), pp.716~721 (2012)
  7. Kimura, M., "The Neutral Theory of Molecular Evolution" (1983), Cambridge University Press
  8. Matteo, P., "New rRNA Gene-Based Phylogenies of the Alphaproteobacteria provide perspective on major Groups, mitochondrial ancestry and mhylogenetic Instability", PLoS One, 8(12), pp.e83383~ (2013)
  9. Oren, A., "Then and now: a systematic review of the systematics of prokaryotes in the last 80years", Antonie van Leeuwenhoek, 106(1), pp.43~56 (2014)
  10. Parte, A.C., "LPSN--list of prokaryotic names with standing in nomenclature", Nucleic Acids Research, 42, pp.D613~D616 (2014)
  11. Saitou, N., "The neighbor-joining method: a new method for reconstructing phylogenetic trees", Molecular Biology and Evolution, 4(4), pp.406~425 (1987)
  12. Tamura, K., "MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods", Mol. Biol. Evol, 28(10), pp.2731~2739 (2011)
  13. Thompson, J.D., "The CLUSTAL_X windows interface : flexible strategies for multiple sequence alignment aided by quality analysis tools", Nucleic Acids Research, 25, pp.4876~4882 (1997)
  14. Williams, K.P., "A robust species tree for the Alphaproteobacteria", Journal of Bacteriology, 189(13), pp.4578~4586 (2007)

관련 논문AI추천

A report of 42 unrecorded bacterial species belonging to the Alphaproteobacteria in Korea김승범, 배진우, 성치남, 윤정훈, 임완택, 장광엽, 전체옥, 조기성, 조장천, 진현미, 차창준국립생물자원관 · Journal of Species Research2016 · 제5권 제2호A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea김경현, 김승범, 배진우, 성치남, 윤정훈, 임완택, 장광엽, 전체옥, 조기성, 조장천, 차창준국립생물자원관 · Journal of Species Research2017 · 제6권 제2호Description of 39 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria김승범, 배진우, 성치남, 윤정훈, 임완택, 장광엽, 전체옥, 조기성, 조장천, 주베르국립생물자원관 · Journal of Species Research2017 · 제6권 제2호Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria김명겸, 김승범, 김원용, 성치남, 임완택, Che Ok Jeon, Jung-Hoon Yoon, KISEONG JOH, Qing Mei Liu국립생물자원관 · Journal of Species Research2019 · 제8권 제4호A report on 24 unrecorded bacterial species of Korea isolated in 2016, belonging to the orders Rhizobiales and Sphingomonadales in the class Alphaproteobacteria김승범, 김원용, 이순동, 임완택, 전체옥, 정요찬, 조기성, 조장천, 차창준국립생물자원관 · Journal of Species Research2018 · 제7권 제1호A report of 35 unrecorded bacterial species belonging to the classes Alphaproteobacteria and Betaproteobacteria in Korea김명겸, 김승범, 김원용, 성치남, 윤정훈, 임완택, 전체옥, 정혜수, 조기성, 차창준국립생물자원관 · Journal of Species Research2021 · 제10권 제1호

이 간행물의 다른 논문 (8건)