A report of eight unrecorded UV-resistant bacterial species in Korea isolated in 2018
0
조회
0
다운로드
0
인용
0
참고문헌
키워드
초록
Eight bacterial strains, 18JY8-13, 18JY13-16, 18JY43-7, 18JY12-7, 18JY1-1, 18JY1-7, 18JY15-3, and 18JY7-2 assigned to the phylum Firmicutes were isolated from a variety of soil samples collected in the Jeju Island, Korea. Cells of the eight strains were Gram-positive, aerobic and showed resistant to UV-radiation. Phylogenetic analysis based on 16S rRNA gene sequence revealed that strains 18JY8-13, 18JY13-16, 18JY43-7, 18JY12-7, 18JY1-1, 18JY1-7, 18JY15-3, and 18JY7-2 were most closely related to Bacillus paranthracis (99.9%), Bacillus paramycoides (99.6%), Bacillus australimaris (99.9%), Bacillus wiedmannii (100%), Bacillus halosaccharovorans (99.6%), Bacillus deserti (98.7%), Bacillus cereus (99.8%), and Bacillus albus (100%), respectively. This is the first report of these eight species in Korea.
Abstract
Eight bacterial strains, 18JY8-13, 18JY13-16, 18JY43-7, 18JY12-7, 18JY1-1, 18JY1-7, 18JY15-3, and 18JY7-2 assigned to the phylum Firmicutes were isolated from a variety of soil samples collected in the Jeju Island, Korea. Cells of the eight strains were Gram-positive, aerobic and showed resistant to UV-radiation. Phylogenetic analysis based on 16S rRNA gene sequence revealed that strains 18JY8-13, 18JY13-16, 18JY43-7, 18JY12-7, 18JY1-1, 18JY1-7, 18JY15-3, and 18JY7-2 were most closely related to Bacillus paranthracis (99.9%), Bacillus paramycoides (99.6%), Bacillus australimaris (99.9%), Bacillus wiedmannii (100%), Bacillus halosaccharovorans (99.6%), Bacillus deserti (98.7%), Bacillus cereus (99.8%), and Bacillus albus (100%), respectively. This is the first report of these eight species in Korea.
참고문헌 (19)
- Demharter, W., "Bacillus thermocloaceae sp. nov, a new thermophilic species from sewage-sludge", Systemic Applied Microbiology, 11, pp.272~276 (1989)[DOI]
- Doetsch, R., "Determinative methods of light microscopy. Manual of Methods for General Bacteriology", pp.21~33 (1981)
- Edgar, R.C., "MUSCLE: multiple sequence alignment with high accuracy and high throughput", Nucleic Acids Research, 32, pp.1792~1797 (2004)[DOI]
- Felsenstein, J., "Confidence limits on phylogenies: an approach using the bootstrap", Evolution, 39(4), pp.783~791 (1985)[DOI]
- Hall, T.A., "Nucleic acids symposium series, 1999. vol 41", pp.95~98 (1999), Information Retrieval Ltd.
- Im S., "2013 Comparative survival analysis of 12 histidine kinase mutants of Deinococcus radiodurans after exposure to DNA-damaging agents", Bioprocess and Biosystems Engineering, 36, pp.781~789[DOI]
- Kampfer P., "Deinococcus aquatilis sp. nov., isolated from water", International Journal of Systematic and Evolutionary Microbiology, 58, pp.2803~2806 (2008)[DOI]
- Kim O. -S., "Introducing EzTaxon-e : a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species", International Journal of Systematic Evolutinary Microbiology, 62, pp.716~721 (2012)[DOI]
- Kimura, M., "The neutral theory of molecular evolution" (1983), Cambridge University Press
- Ludwig, W., "Bergey's Manual of Systematic Bacteriology", pp.1~14 (2009), Springer
- Roberts, M.S., "Bacillus mojavensis sp. nov., distinguishable from Bacillus subtilis by sexual isolation, divergence in DNA sequence, and differences in fatty acid composition", International Journal of Systematic Bacteriology, 44, pp.256~264 (1994)[DOI]
- Saitou, N., "The neighbor-joining method: a new method for reconstructing phylogenetic trees", Molecular Biology and Evolution, 4, pp.406~425 (1987)
- Selvam, K., "DdrA, DdrD, and PprA: components of UV and mitomycin C resistance in Deinococcus radiodurans R1", PLoS One, 8(7), pp.e69007~ (2013)[DOI]
- Taxonomic hierarchy of the phylum Firmicutes and novel Firmicutes species originated from various environments in Korea, "The Journal of Microbiology", 2018, 1~10, pp.한국미생물학회, 10.1007[DOI]
- Smibert, R.M., "Methods for General and Molecular Bacteriology", pp.607~654 (1994), American Society for Microbiology
- Tamura K., "MEGA5 : molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods", Molecular Biology and Evolution, 28, pp.2731~2739 (2011)[DOI]
- Ruger, H.J., "New psychrophilic and psychrotolerant Bacillus marinus strains from tropical and polar deep-sea sediments and emended description of the species", International Journal of Systematic and Evolutionary Microbiology, 50, pp.1305~1313 (2000)[DOI]
- Weisburg W. G., "16S ribosomal DNA amplification for phylogenetic study", Journal of Bacteriology, 173, pp.697~703 (1991)[DOI]
- Wragg, P., "Comparison of Biolog GEN III MicroStation semi-automated bacterial identification system with matrix-assisted laser desorption ionization-time of flight mass spectrometry and 16S ribosomal RNA gene sequencing for the identification of bacteria of veterinary interest", Journal of Microbiological Methods, 105, pp.16~21 (2014)[DOI]
