A report on 20 unrecorded bacterial species of Korea isolated from soil in 2021
1
조회
0
다운로드
1
인용
0
참고문헌
키워드
초록
As a subset study to discover indigenous prokaryotic species in Korea, we isolated 20 bacterial strains and assigned them to the phyla Actinobacteria, Bacteroidota, Firmicutes, and Proteobacteria. From the high 16S rRNA gene sequence similarity (≥ 98.7%) and formation of a robust phylogenetic clades, we determined that each strain belonged to independent, predefined bacterial species. There are no official reports of these 20 species in Korea; therefore, 7 strains of the Actinobacteria, 2 strain of the Bacteroidota, 3 strains of the Firmicutes, and 8 strains of the Firmicutes are described in Korea for the first time. Gram reaction, colony and cell morphology, basic biochemical characteristics, and isolation sources are also described in the species description section.
Abstract
As a subset study to discover indigenous prokaryotic species in Korea, we isolated 20 bacterial strains and assigned them to the phyla Actinobacteria, Bacteroidota, Firmicutes, and Proteobacteria. From the high 16S rRNA gene sequence similarity (≥ 98.7%) and formation of a robust phylogenetic clades, we determined that each strain belonged to independent, predefined bacterial species. There are no official reports of these 20 species in Korea; therefore, 7 strains of the Actinobacteria, 2 strain of the Bacteroidota, 3 strains of the Firmicutes, and 8 strains of the Firmicutes are described in Korea for the first time. Gram reaction, colony and cell morphology, basic biochemical characteristics, and isolation sources are also described in the species description section.
참고문헌 (25)
- Alexander, M., "Biodegradation and bioremediation" (1999), Gulf Professional Publishing
- Doetsch, R.N., "Manual of Methods for General Bacteriology", pp.21~33 (1981)
- Felsenstein, J., "Confidence limits on phylogenies: an approach using the bootstrap", Evolution, 39(4), pp.783~791 (1985)
- Gao, B., "Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria", Int J Syst Evol Microbiol, 55(6), pp.2401~2412 (2005)
- Gianfreda, L., "Interactions between xenobiotics and microbial and enzymatic soil activity", Crit Rev Environ Sci Technol, 38(4), pp.269~310 (2008)
- Higson, F.K., "Degradation of xenobiotics by white rot fungi", Rev Environ Contam Toxicol, pp.111~152 (1991)
- Hong, S.H., "Bioremediation Efficiency of Oil-Contaminated Soil using Microbial Agents", MBL, 39(3), pp.301~307 (2011)
- King, G.M., "Microbial responses to the Deepwater Horizon oil spill: from coastal wetlands to the deep sea", Ann Rev Mar Sci, 7, pp.377~401 (2015)
- 김동욱, "A report on 15 unrecorded bacterial species of Korea isolated in 2016, belonging to the class Betaproteobacteria", Journal of Species Research, 7(2), pp.97~103 (2018), 국립생물자원관[DOI]
- 김동욱, "A report of unrecorded bacterial species of Korea isolated in 2016, belonging to the family Deinococcaceae and Planctomycetaceae", Journal of Species Research, 7(1), pp.9~12 (2018), 국립생물자원관[DOI]
- 김현중, "토양에서 분리한 국내 미기록종 Pseudomonas 속 6종의 생화학적 특성과 계통 분류", 미생물학회지, 55(1), pp.39~45 (2019), 한국미생물학회[DOI]
- Kimura, M., "The neutral theory of molecular evolution" (1983), Cambridge University Press
- Kumar, S., "MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets", Mol Biol Evol, 33(7), pp.1870~1874 (2016)
- Lawson, P.A., "The Bifidobacteria and Related Organisms", pp.1~8 (2018)
- McClain, C.R., "Persistent and substantial impacts of the Deepwater Horizon oil spill on deep-sea megafauna", R Soc Open Sci, 6(8), pp.191164~ (2019)
- Shamsun Nahar, "Report on 30 unrecorded bacterial species of the phylum Firmicutes isolated from Korea in 2016", Journal of Species Research, 7(1), pp.50~59 (2018), 국립생물자원관[DOI]
- Nedashkovskaya, O.I., "Pontibacter actiniarum gen. nov., sp. nov., a novel member of the phylum ‘Bacteroidota’, and proposal of Reichenbachiella gen. nov. as a replacement for the illegitimate prokaryotic generic name Reichenbachia Nedashkovskaya et al. 2003", Int J Syst Evol Microbiol, 55(6), pp.2583~2588 (2005)
- Pruesse, E., "SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes", Bioinformatics, 28(14), pp.1823~1829 (2012)
- Saitou, N., "The neighbor-joining method: a new method for reconstructing phylogenetic trees", Mol Biol Evol, 4(4), pp.406~425 (1987)
- 성치남, "Taxonomic hierarchy of the phylum Proteobacteria and Korean indigenous novel Proteobacteria species", Journal of Species Research, 8(2), pp.197~214 (2019), 국립생물자원관[DOI]
- Sintayehu, D.W., "Impact of climate change on biodiversity and associated key ecosystem services in Africa: a systematic review", EHS, 4(9), pp.225~239 (2018)
- Smith, D., "Biological control and the Nagoya Protocol on access and benefit sharing-a case of effective due diligence", Biocontrol Sci Technol, 28(10), pp.914~926 (2018)
- Thomas, F., "Environmental and gut Bacteroidota: the food connection", Front. Microbiol, 2, pp.93~ (2011)
- Weisburg, W.G., "16S ribosomal DNA amplification for phylogenetic study", J Bacteriol, 173(2), pp.697~703 (1991)
- Yoon, S.H., "Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies", Int J Syst Evol Microbiol, 67(5), pp.1613~ (2017)
