Eighteen unreported radiation-resistant bacterial species isolated from Korea in 2018
4
조회
0
다운로드
0
인용
0
참고문헌
키워드
초록
In 2018, as a subset study to discover indigenous prokaryotic species in Korea, a total of 18 unreported bacterial strains were discovered. From the high 16S rRNA gene sequence similarity (>98.8%) and formation of a robust phylogenetic clade, it was determined that each strain belonged an independent and predefined bacterial species. There were no official report that these 18 species were previously described in Korea; therefore, one strain of Williamsia, one strain of Rhodococcus, three strains of Microbacterium, three strains of Agromyces, one strain of Arthrobacter, one strain of Paeniglutamicibacter, one strain of Pseudarthrobacter, one strain of Nocardioides, one strain of Fibrella, one strain of Hymenobacter, one strain of Deinococcus, two strains of Fictibacillus, and one strain of Paenibacillus are described as unreported bacterial species in Korea. Gram reaction, basic biochemical characteristics, and colony and cell morphologies are described in the species description section.
Abstract
In 2018, as a subset study to discover indigenous prokaryotic species in Korea, a total of 18 unreported bacterial strains were discovered. From the high 16S rRNA gene sequence similarity (>98.8%) and formation of a robust phylogenetic clade, it was determined that each strain belonged an independent and predefined bacterial species. There were no official report that these 18 species were previously described in Korea; therefore, one strain of Williamsia, one strain of Rhodococcus, three strains of Microbacterium, three strains of Agromyces, one strain of Arthrobacter, one strain of Paeniglutamicibacter, one strain of Pseudarthrobacter, one strain of Nocardioides, one strain of Fibrella, one strain of Hymenobacter, one strain of Deinococcus, two strains of Fictibacillus, and one strain of Paenibacillus are described as unreported bacterial species in Korea. Gram reaction, basic biochemical characteristics, and colony and cell morphologies are described in the species description section.
참고문헌 (28)
- Battista, J. R, "Deinococcus-ThermusGroup", pp.1~12 (2016), eLS
- 최철영, "Physiological effects of various light spectra on oxidative stress by starvation in olive flounder, Paralichthys olivaceus", Molecular & Cellular Toxicology, 14(4), pp.399~408 (2018), 대한독성 유전단백체 학회
- Edgar, R. C., "MUSCLE : multiple sequence alignment with high accuracy and high throughput", Nucleic Acids Res, 32, pp.1792~1797 (2004)
- Felsenstein, J, "Confidence limits on phylogenies : an approach using the bootstrap", Evolution, 39, pp.783~791 (1985)
- Hall, T. A., "BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95", 98, Nucleic acids symposium series, pp.1999, (41)[DOI]
- Hirsch, P., "Hymenobacter roseosalivarius gen. nov., sp. nov. from continental Antartica soils and sandstone: bacteria of the Cytophaga", Flavobacterium, Syst. Appl. Mi-crobiol, pp.1998, 21[DOI]
- Im, S., "Comparative survival analysis of 12 histidine kinase mutants of Deinococcus radiodurans after exposure to DNA-damaging agents", Bioprocess Biosyst Eng, 36, pp.781~789 (2013)
- Seon-A Jang, "Gamma irradiation-induced liver injury and its amelioration by red ginseng extract", Molecular & Cellular Toxicology, 13(4), pp.461~469 (2017), 대한독성 유전단백체 학회
- Myung Kyum Kim, "Complete Genome Sequence of Hymenobacter sedentarius DG5BT, a Bacterium Resistant to Gamma Radiation", Molecular & Cellular Toxicology, 13(2), pp.199~205 (2017), 대한독성 유전단백체 학회
- 김명겸, "Complete genome sequence of Spirosoma pulveris JSH 5-14T , a bacterium isolated from a dust sample", Molecular & Cellular Toxicology, 13(4), pp.373~378 (2017), 대한독성 유전단백체 학회
- Kim, O. S., "Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncul-tured species", International Journal of Systematic and Evolutionary Microbiology, 62, pp.716~721 (2012)
- Kimura, M, "The neutral theory of molecular evolution" (1983), Cambridge University Press
- Kumar, S., "MEGA7 : Molec-ular Evolutionary Genetics Analysis version 7. 0 for bigger datadets", Molecular Biology and Evolution, 33, pp.1870~1874 (2016)
- Lee, J. J., "Hymenobacter aquaticus sp. nov., a radia-tion-resistant bacterium isolated from a river", Interna-tional Journal of Systematic and Evolutionary Microbi-ology, 67, pp.1206~1211 (2017)
- Lee, J. J., "Hymenobacter swuensis sp. nov., a gamma-ra-diation-resistant bacteria isolated from mountain soil", Cur-rent Microbiology, 68, pp.305~310 (2014)
- Miao, V., "Actinobacteria : the good, the bad, and the ugly", Antonie Van Leeuwenhoek, 98, pp.143~150 (2010)
- Saitou, N., "The neighbor-joining method : a new method for reconstructing phylogenetic trees", Mo-lecular Biology and Evolution, 4, pp.406~425 (1987)
- Gayathri Sathiyaraj, "Complete genome sequence of Microvirga sp. 17mud 1-3, a radiation-resistant bacterium", Molecular & Cellular Toxicology, 14(3), pp.347~352 (2018), 대한독성 유전단백체 학회
- Gayathri Sathiyaraj, "Complete genome sequence of Nibribacter radioresistens DG15C, a radiation resistant bacterium", Molecular & Cellular Toxicology, 14(3), pp.323~328 (2018), 대한독성 유전단백체 학회
- Selvam, K., "DdrA, DdrD, and PprA: components of UV and mitomy-cin C resistance in Deinococcus radiodurans R1", PLoS One, 8(7), pp.e69007~ (2013)
- Taxonomic hierarchy of the phylum Firmicutes and novel Firmicutes species originated from various environments in Korea, "The Journal of Microbiology", 2018, 1~10, pp.한국미생물학회, 10.1007[DOI]
- Srinivasan, S., "Hymenobacter terrae sp. nov., a bac-terium isolated from soil", Current Microbiology, 70, pp.643~650 (2015)
- Sathiyaraj Srinivasan, "Complete genome sequence of Hymenobacter sp. DG25A, a gamma radiation-resistant bacterium isolated from soil", Molecular & Cellular Toxicology, 13(1), pp.65~72 (2017), 대한독성 유전단백체 학회
- Su, S., "Hymenobacter kanuolensis sp. nov., a novel radiationresistant bacterium", International Journal of Sys-tematic and Evolutionary Microbiology, 64, pp.2108~2112 (2014)
- Weisburg, W. G., "The Deinococcus-Thermus Phylum and the Effect of rRNA Composition on Phylogenetic Tree Construction", Systematic and Applied Microbiology, 11(2), pp.128~134 (1989)
- Weisburg, W. G., "16S ribosomal DNA amplification for phylogenetic study", Journal of Bacteriology, 173, pp.697~703 (1991)
- Wragg, P., "Compar-ison of Biolog GEN III MicroStation semi-automated bacterial identification system with matrix-assisted laser desorption ionization-time of flightmass spectrometry and 16S ribosomal RNA gene sequencing for the iden-tification of bacteria of veterinary interest", Journal of Microbiological Methods, 105, pp.16~21 (2014)
- Zhang, Q., "Hymenobacter xinjiangensis sp. nov., a radiation-resistant bacterium isolated from the desert of Xinjiang, China", International Journal of Systematic and Evolutionary Microbiology, 57, pp.1752~1756 (2007)