Genetic Distances between Tailfin Anchovy (Coilia nasus) Populations Analyzed by PCR
1
조회
0
다운로드
2
인용
0
참고문헌
키워드
초록
The author established a PCR-based genetic platform to examine the hierarchical polar dendrogram of Euclidean genetic distances of one tailfin anchovy population, especially for Coilia nasus, which was further associated with other fish population, by connecting with specifically designed oligonucleotide primer sets. Five oligonucleotide primers were used to generate a total of 260 and 211 scorable fragments in Coilia populations I and II, respectively. The DNA fragments ranged from greater than (approximately) 100 to more than 2,000 bp. The average bandsharing values (BS) of individuals from the anchovy population I (0.693) displayed higher values than individuals from population II (0.675). The genetic distance between individuals established the existence of a close relationship in group II. Comparatively, individuals of one anchovy population were fairly related to other fish populations, as shown in the polar hierarchical dendrogram of Euclidean genetic distances. The noteworthy genetic distance determined between two Coilia nasus populations demonstrates that this PCR technique can be applied as one of the several devices for individuals and/or population biological DNA researches undertaken for safeguarding species and for production of anchovies in the littoral area of Korea.
Abstract
The author established a PCR-based genetic platform to examine the hierarchical polar dendrogram of Euclidean genetic distances of one tailfin anchovy population, especially for Coilia nasus, which was further associated with other fish population, by connecting with specifically designed oligonucleotide primer sets. Five oligonucleotide primers were used to generate a total of 260 and 211 scorable fragments in Coilia populations I and II, respectively. The DNA fragments ranged from greater than (approximately) 100 to more than 2,000 bp. The average bandsharing values (BS) of individuals from the anchovy population I (0.693) displayed higher values than individuals from population II (0.675). The genetic distance between individuals established the existence of a close relationship in group II. Comparatively, individuals of one anchovy population were fairly related to other fish populations, as shown in the polar hierarchical dendrogram of Euclidean genetic distances. The noteworthy genetic distance determined between two Coilia nasus populations demonstrates that this PCR technique can be applied as one of the several devices for individuals and/or population biological DNA researches undertaken for safeguarding species and for production of anchovies in the littoral area of Korea.
참고문헌 (27)
- 백근욱, "고리 주변해역에서 출현하는 웅어(Coilia nasus)의 위내용물 조성", 한국어류학회지, 23(2), pp.163~167 (2011), 한국어류학회
- Bommineni VR, "Analysis of hybrids of durum wheat with Thinopyrum junceiforme using RAPD markers", Theor Appl Genet, 95, pp.757~763 (1997)
- Gwakisa PS, "Characterization of Zebu cattle breeds in Tanzania using random amplified polymorphic DNA markers", Anim Genet, 25, pp.89~94 (1994)
- M. S. Islam, "Genetic Analysis of Three River Populations of Catla catla (HAMILTON) Using Randomly Amplified Polymorphic DNA Markers", Animal Bioscience, 18(4), pp.453~457 (2005), 아세아·태평양축산학회
- Jeffreys AJ, "DNA fingerprints of dogs and cats", Anim Genet, 18, pp.1~15 (1987)
- Jiang T, "A comparative study of the morphology of sagittal otolith in Coilia nasus, Coilia mystus and Coilia nasus taihuensis", Mar Sci, 35, pp.31~35 (2011)
- 전제천, "한국 서해산 웅어, Coilia nasus 암컷의 성숙과 산란", 발생과 생식, 13(2), pp.123~132 (2009), 한국발생생물학회
- Jun JC, "Histological study on the reproductive cycle of Coilia nasus", J Aqua, 16, pp.179~186 (2003)
- 김종연, "Genetic Differences and DNA Polymorphism in Oyster (Crassostrea spp.) Analysed by PAPD-PCR", Genes & Genomics, 26(2), pp.123~134 (2004), 한국유전학회
- 윤종만, "Genetic Variation in Geographic Crayfish (Cambaroides similis) Populations", 한국어병학회지, 19(2), pp.141~153 (2006), 한국어병학회
- 권혁준, "One unusual species, Coilia sp. (Engraulidae, Pisces) from the Yellow Sea", Animal Cells and Systems, 14(2), pp.137~145 (2010), 한국통합생물학회
- Kwun NL, "The morphological development of larvae and juveniles of the estuary tailfin anchovy, Coilia nasus from Korea", M.S., pp.2012
- 이봉우, "웅어, Coilia nasus의 생식주기에 관한 조직학적 연구", 한국양식학회지, 16(3), pp.179~186 (2003), 한국양식학회
- Mamuris Z, "Taxonomic relationships between four species of the Mullidae family revealed by three genetic methods : Allozymes, random amplified polymorpic DNA and mitochondrial DNA", J Fish Biol, 55, pp.572~587 (2005)
- 오현, "Genetic Distances of Three Mollusk Species Investigated by PCR Analysis", 발생과 생식, 18(1), pp.43~49 (2014), 한국발생생물학회
- Su Young Park, "Genetic Differences and Variations in Slipper Lobster (Ibacus ciliatus) and Deep Sea Lobster (Puerulus sewelli) Determined by RAPD Analysis", Genes & Genomics, 27(4), pp.307~317 (2005), 한국유전학회
- Amit Kumar Sharma, "Molecular Characterization of Rathi and Tharparkar Indigenous Cattle (Bos indicus) Breeds by RAPD-PCR", Animal Bioscience, 17(9), pp.1204~1209 (2004), 아세아·태평양축산학회
- Young-Jae Song, "Genetic Differences of Three Pollicipes mitella Populations Identified by PCR Analysis", 발생과 생식, 17(3), pp.199~205 (2013), 한국발생생물학회
- Ye X, "Genetic diversity of commercial turkey primary breeding lines as estimated by DNA fingerprinting", Poult Sci, 77, pp.802~807 (1998)
- Yoon JM, "Genetic similarity and difference between common carp and Israeli carp(Cyprinus carpio)based on random amplified polymorphic DNAs analyses", Korean J Biol Sci, 5, pp.333~339 (2001)
- Jong-Man Yoon, "Genetic Differences within and between Populations of Korean Catfish (S. asotus) and Bullhead (P. fulvidraco) Analysed by RAPD-PCR", Animal Bioscience, 17(8), pp.1053~1061 (2004), 아세아·태평양축산학회
- 윤종만, "Genetic Differences and Geographic Variation in Cuttle Fish (Sepia esculenta Hoyle)", 발생과 생식, 14(3), pp.163~170 (2010), 한국발생생물학회
- Jong-Man Yoon, "Variation of Shell Color in Three Geographic White Clam (Meretrix lusoria) Populations of the Yellow Sea", 발생과 생식, 16(1), pp.47~51 (2012), 한국발생생물학회[DOI]
- 윤종만, "Genetic Distances of Paralichthys olivaceus Populations Investigated by PCR", 발생과 생식, 22(3), pp.283~288 (2018), 한국발생생물학회
- 윤종만, "Genetic Distances of Rainbow Trout and Masu Salmon as Determined by PCR-Based Analysis", 발생과 생식, 24(3), pp.241~248 (2020), 한국발생생물학회
- Yoke-Kqueen C, "Random amplified polymorphic DNA analysis of genetically modified organisms", J Biotechnol, 127, pp.161~166 (2006)
- Zhou L, "Analysis of genetic heterogeneity among five gynogenetic clones of silver crucian carp, Carassius auratus gibelio Bloch, based on detection of RAPD molecular markers", Cytogenet Cell Genet, 88, pp.133~139 (2000)