Glycoscience aids in biomarker discovery

키워드

참고문헌 (88)

1. Apweiler, R., "On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database", BBA-Gen. Subjects, 1473, pp.4~8 (1999)
2. An, H. J., "Extensive determination of glycan heterogeneity reveals an unusual abundance of high-mannose glycans in enriched plasma membranes of human embryonic stem cells", Mol. Cell. Proteom., 11, pp.1~13 (2011)
3. Arndt, N. X., "Differential carbohydrate binding and cell surface glycosylation of human cancer cell lines", J. Cell. Biochem., 112, pp.2230~2240 (2011)
4. Li, Y. -L., "Cell surface sialylation and fucosylation are regulated by the cell recognition molecule L1 via PLCγ and cooperate to modulate embryonic stem cell survival and proliferation", FEBS Lett., 583, pp.703~710 (2009)
5. Baum, L. G., "Developing a taste for sweets", Immunity, 16, pp.5~8 (2002)
6. 안현주, "Glycomics and disease markers", CURRENT OPINION IN CHEMICAL BIOLOGY, 13(5-6), pp.601~607, CURRENT BIOLOGY LTD
7. 안현주, "The prospects of glycan biomarkers for the diagnosis of diseases", MOLECULAR BIOSYSTEMS, 5(1), pp.17~20 (2009), ROYAL SOC CHEMISTRY
8. 안현주, "Glycomics analyses of tear fluid for the diagnostic detection of ocular rosacea", JOURNAL OF PROTEOME RESEARCH, 4(6), pp.1981~1987 (2005), AMER CHEMICAL SOC
9. Vieira, A. C., "Glycomic analysis of tear and saliva in ocular rosacea patients: the search for a biomarker", The Ocular Surface (2012)
10. 박유미, "A strategy for annotating the human milk glycome", JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 54(20), pp.7471~7480, AMER CHEMICAL SOC
11. Barile, D., "Permeate from cheese whey ultrafiltration is a source of milk oligosaccharides", Int. Dairy J., 19, pp.524~530 (2009)
12. Tao, N., "Bovine milk glycome", J. Dairy Sci., 91, pp.3768~3778 (2008)
13. LoCascio, R. G., "A versatile and scalable strategy for glycoprofiling bifidobacterial consumption of human milk oligosaccharides", Microb. Biotechnol., 2, pp.333~342 (2009)
14. de Leoz, M. L. A., "High-mannose glycans are elevated during breast cancer progression", Mol. Cell. Proteom., 10, pp.1~9 (2011)
15. 안현주, "Human Serum Processing and Analysis Methods for Rapid and Reproducible N-Glycan Mass Profiling", JOURNAL OF PROTEOME RESEARCH, 9(10), pp.4952~4959, AMER CHEMICAL SOC
16. 안현주, "Detecting glycan cancer biomarkers in serum samples using MALDI FT-ICR mass spectrometry data", BIOINFORMATICS, 25(2), pp.251~257, OXFORD UNIV PRESS
17. Hua, S., "Comprehensive native glycan profiling with isomer separation and quantitation for the discovery of cancer biomarkers", Analyst, 136, pp.3663~3671 (2011)
18. Ruhaak, L. R., "N-glycan profiling of dried blood spots", Anal.Chem., 84, pp.396~402 (2011)
19. Wu, S., "Development of an annotated library of neutral human milk oligosaccharides", J. Protoeme Res., 9, pp.4138~4151 (2010)
20. Wu, S., "Annotation and structural analysis of sialylated humanmilk oligosaccharides", J. Protoeme Res., 10, pp.856~868 (2010)
21. Aldredge, D., "Annotation of a serum n-glycan library for rapid identification of structures", J. Protoeme Res., 11, pp.1958~1968 (2012)
22. Hua, S., "Site-specific protein glycosylation analysis with glycan isomer differentiation", Anal. Bioanal. Chem., 403, pp.1291~1302 (2012)
23. Bäckström, M., "Sensitive liquid chromatographyelectrospray mass spectrometry allows for the analysis of the o-glycosylation of immunoprecipitated proteins from cells or tissues: application to muc1 glycosylation in cancer", J. Protoeme Res., 8, pp.538~545 (2008)
24. Bereman, M. S., "Development of a nanolc ltq orbitrap mass spectrometricmethod for profiling glycans derived from plasmafrom healthy, benign tumor control and epithelial ovariancancer patients", Anal. Chem., 81, pp.1130~1136 (2008)
25. Bones, J., "Ultra performance liquid chromatographic profiling of serum n-glycans for fast and efficient identification of cancer associated alterations in glycosylation", Anal. Chem., 82, pp.10208~10215 (2010)
26. 안현주, "Profiling of glycans in serum for the discovery of potential biomarkers for ovarian cancer", JOURNAL OF PROTEOME RESEARCH, 5(7), pp.1626~1635, AMER CHEMICAL SOC
27. 안현주, "A serum glycomics approach to breast cancer biomarkers", MOLECULAR CELLULAR PROTEOMICS, 6(1), pp.43~55, AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC
28. 안현주, "Glycomics analysis of serum: a potential new biomarker for ovarian cancer?", INTERNATIONAL JOURNAL OF GYNECOLOGICAL CANCER, 18(3), pp.470~475 (2008), BLACKWELL PUBLISHING
29. de Leoz, M. L. A., "Glycomic approach for potential biomarkers on prostate cancer: Profiling of N-linked glycans in human sera and pRNS cell lines", Dis. Markers, 25, pp.243~258 (2008)
30. Kyselova, Z., "Alterations in the serum glycome due to metastatic prostate cancer", J. Protoeme Res., 6, pp.1822~1832 (2007)
31. Mann, B. F., "Glycomic and proteomic profiling of pancreatic cyst fluids identifies hyperfucosylated lactosamines on the N-linked glycans of overexpressed glycoproteins", Mol. Cell. Proteom. (2012)
32. Alley, W. R., "N-linked glycan structures and their expressions change in the blood sera of ovarian cancer patients", J. Protoeme Res., 11, pp.2282~2300 (2012)
33. Balog, C. I. A., "N-glycosylation of colorectal cancer tissues: a liquid chromatography and mass spectrometry-based investigation", Mol. Cell. Proteom. (2012)
34. Alley, W. R., "Chip-based reversed-phase liquid chromatographymass spectrometry of permethylated n-linked glycans: a potential methodology for cancer-biomarker discovery", Anal. Chem., 82, pp.5095~5106 (2010)
35. Prater, B. D., "High-throughput immunoglobulin G N-glycancharacterization using rapid resolution reverse-phase chromatographytandem mass spectrometry", Anal. Biochem., 385, pp.69~79 (2009)
36. Yu, S.-Y., "Priming mass spectrometry- based sulfoglycomic mapping for identification of terminal sulfated lacdiNAc glycotope", Glycoconj. J., pp.1~12 (2012)
37. Kronewitter, S. R., "The development of retrosynthetic glycan libraries to profile and classify the human serum N-linked glycome", Proteomics, 9, pp.2986~2994 (2009)
38. Li, B., "Structure determination by MALDI-IRMPD mass spectrometry and exoglycosidase digestions o O-linked oligosaccharides from Xenopus borealis egg jelly", Glycobiology, 21, pp.877~894 (2011)
39. An, H. J., "Structure elucidation of native N- and O-linked glycans by tandem mass spectrometry(tutorial)", Mass Spectrom. Rev., 30, pp.560~578 (2011)
40. 안현주, "Interrogation of N-linked oligosaccharides using infrared multiphoton dissociation in FT-ICR mass spectrometry", ANALYTICAL CHEMISTRY, 78(14), pp.4990~4997, AMER CHEMICAL SOC
41. Ito, H., "Direct structural assignment of neutral and sialylated N-glycans of glycopeptides using collision-induced dissociation MSn spectral matching", Rapid Commun. Mass Sp., 20, pp.3557~3565 (2006)
42. Zhang, J., "Infrared multiphoton dissociation of O-linked mucin-type oligosaccharides", Anal. Chem., 77, pp.208~214 (2004)
43. Zhao, J., "Comparative serum glycoproteomics using lectin selected sialic acid glycoproteins with mass spectrometric analysis: application to pancreatic cancer serum", J. Protoeme Res., 5, pp.1792~1802 (2006)
44. De Reggi, M., "The glycan moiety of human pancreatic lithostathine", Eur. J. Biochem., 230, pp.503~510 (1995)
45. Hua, S., "Application of nano-LC-based glycomics towards biomarker discovery", Bioanalysis, 3, pp.2573~2585 (2011)
46. Pabst, M., "Mass + retention time = structure: a strategy for the analysis of N-glycans by carbon LC-ESI-MS and its application to fibrin N-glycans", Anal. Chem., 79, pp.5051~5057 (2007)
47. Campbell, M. P., "GlycoBase and autoGU: tools for HPLC-based glycan analysis", Bioinformatics, 24, pp.1214~1216 (2008)
48. Kreunin, P., "Bladder cancer associated glycoprotein signatures revealed by urinary proteomic profiling", J. Protoeme Res., 6, pp.2631~2639 (2007)
49. Qiu, Y., "Plasma glycoprotein profiling for colorectal cancer biomarker identification by lectin glycoarray and lectin blot", J. Protoeme Res., 7, pp.1693~1703 (2008)
50. Ahn, Y., "A lectin- coupled, multiple reaction monitoring based quantitative analysis of human plasma glycoproteins by mass spectrometry", Anal. Bioanal. Chem., 402, pp.2101~2112 (2012)
51. Miyoshi, E., "Fucosylated haptoglobin is a novel marker for pancreatic cancer: detailed analyses of oligosaccharide structures", Proteomics, 8, pp.3257~3262 (2008)
52. Kurogochi, M., "Reverse glycoblotting allows rapid-enrichment glycoproteomics of biopharmaceuticals and disease-related biomarkers", Angew. Chem. Int. Ed., 46, pp.8808~8813 (2007)
53. Zeng, X., "Lung cancer serum biomarker discovery using glycoprotein capture and liquid chromatography mass spectrometry", J. Protoeme Res., 9, pp.6440~6449 (2010)
54. Zhang, H., "High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry", Mol. Cell. Proteom., 4, pp.144~155 (2005)
55. Zhang, H., "Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry", Nat. Biotech., 21, pp.660~666 (2003)
56. Zhou, Y., "Isolation of N-linked glycopeptides from plasma", Anal. Chem., 79, pp.5826~5837 (2007)
57. Tsai, H. -Y., "Glycoproteomics analysis to identify a glycoform on haptoglobin associated with lung cancer", Proteomics, 11, pp.2162~2170 (2011)
58. Dallas, D. C., "N-linked glycan profiling of mature human milk by high-performance microfluidic chip liquid chromatography time-of-flight tandem mass spectrometry", J. Agric. Food Chem., 59, pp.4255~4263 (2011)
59. Alley, W. R., "Use of activated graphitized carbon chips for liquid chromatography", mass spectrometric and tandem mass spectrometric analysis of tryptic glycopeptides, 2009, pp.23, 495~505
60. White, K. Y., "Glycomic characterization of prostate-specific antigen and prostatic acid phosphatase in prostate cancer and benign disease seminal plasma fluids", J. Protoeme Res., 8, pp.620~630 (2009)
61. Kuo, C. -W., "Rapid glycopeptide enrichment and N-glycosylationsite mapping strategies based on amine-functionalizedmagnetic nanoparticles", Anal. Bioanal. Chem., 402, pp.2765~2776 (2012)
62. Gray, J. S. S., "Heterogeneity of glycans at each N-glycosylation site of horseradish peroxidase", Carbohydr. Res., 311, pp.61~69 (1998)
63. Nakano, M., "Site-specific analysis of N-glycans on haptoglobin in sera of patients with pancreatic cancer: A novel approach for the development of tumor markers", Int. J. Cancer, 122, pp.2301~2309 (2008)
64. Wu, Z. L., "Active 1918 pandemic flu viral neuraminidase has distinct N-glycan profile and is resistant to trypsin digestion", Biochem. Biophys. Res. Commun., 379, pp.749~753 (2009)
65. Fujihara, J., "Two N-linked glycosylation sites (Asn18 and Asn106) are both required for full enzymatic activity, thermal stability and resistance to proteolysis in mammalian deoxyribonucleasei", Biosci. Biote-chnol. Biochem., 72, pp.3197~3205 (2008)
66. Pompach, P., "Semi-automated identification of n-glycopeptides by hydrophilic interaction chromatography, nano-reverse-phase lc–ms", ms and glycan database search, 2012, pp.11, 1728~1740
67. Tajiri, M., "Oligosaccharide profiles of the prostate specific antigen in free and complexed forms from the prostate cancer patient serum and in seminal plasma: a glycopeptide approach", Glycobiology, 18, pp.2~8 (2008)
68. Tajiri, M., "Differential analysis of site-specific glycans on plasma and cellular fibronectins: application of a hydrophilic affinity method for glycopeptide enrichment", Glycobiology, 15, pp.1332~1340 (2005)
69. Neue, K., "Elucidation of glycoprotein structures by unspecific proteolysis and direct nanoESI mass spectrometric analysis of ZIC-HILIC-enriched glycopeptides", J. Protoeme Res., 10, pp.2248~2260 (2011)
70. Larsen, M. R., "Characterization of gel-separated glycoproteins using two-step proteolytic digestion combined with sequential microcolumns and mass spectrometry", Mol. Cell. Proteom., 4, pp.107~119 (2005)
71. Xin, L., "Equal ratio of graphite carbon to activated charcoal for enrichment of N-glycopeptides prior to matrix-assisted laser desorption", ionization time-of-flight mass spectrometric identification, 2012, pp.26, 269~274
72. Thaysen-Andersen, M., "Site-specific glycoprofiling of N-Linked glycopeptides using MALDI-TOF MS: strong correlation between signal strength and glycoform quantities", Anal. Chem., 81, pp.3933~3943 (2009)
73. Zauner, G., "Protein glycosylation analysis by HILIC-LC-MS of Proteinase K-generated N- and O-glycopeptides", J. Sep. Sci., 33, pp.903~910 (2010)
74. Yu, Y. Q., "Identification of N-linked glycosylation sites using glycoprotein digestion with pronase prior to MALDI tandem time-of-flight mass spectrometry", Anal. Chem., 79, pp.1731~1738 (2007)
75. 안현주, "Determination of glycosylation sites and site-specific heterogeneity in glycoproteins", CURRENT OPINION IN CHEMICAL BIOLOGY, 13(4), pp.421~426, CURRENT BIOLOGY LTD
76. 안현주, "Determination of N-glycosylation sites and site heterogeneity in glycoproteins", ANALYTICAL CHEMISTRY, 75(20), pp.5628~5637, AMER CHEMICAL SOC
77. Li, H., "Chemoenzymatic synthesis of HIV-1 V3 glycopeptides carrying two N-glycans and effects of glycosylation on the peptide domain", J. Org. Chem., 70, pp.9990~9996 (2005)
78. Liu, X., "Mass spectrometry-based glycomics strategy for exploring N-linked glycosylation in eukaryotes and bacteria", Anal. Chem., 78, pp.6081~6087 (2006)
79. Dodds, E. D., "Analytical performance of immobilized pronase for glycopeptide footprinting and implications for surpassing reductionist glycoproteomics", J. Protoeme Res., 8, pp.502~512 (2008)
80. Clowers, B. H., "Site determination of protein glycosylation based on digestion with immobilized nonspecific proteases and fourier transform ion cyclotron resonance mass spectrometry", J. Protoeme Res., 6, pp.4032~4040 (2007)
81. 안현주, "A new computer program (GlycoX) to determine simultaneously the glycosylation sites and oligosaccharide heterogeneity of glycoproteins", JOURNAL OF PROTEOME RESEARCH, 5(10), pp.2800~2808, AMER CHEMICAL SOC
82. Seipert, R. R., "Factors that influence fragmentation behavior of N-linked glycopeptide ions", Anal. Chem., 80, pp.3684~3692 (2008)
83. Seipert, R. R., "Exploiting differential dissociation chemistries of o-linked glycopeptide ions for the localization of mucin-type protein glycosylation", J. Protoeme Res., 8, pp.493~501 (2008)
84. Wuhrer, M., "Protein glycosylation analyzed by normal-phase nano-liquid chromatography-mass spectrometry of glycopeptides", Anal. Chem., 77, pp.886~894 (2004)
85. Temporini, C., "Pronase-immobilized enzyme reactor: an approach for automation in glycoprotein analysis by LC", LC-ESI, Anal. Chem., pp.2006, 79[DOI]
86. Tang, Z., "Identification of N-glycan serum markers associated with hepatocellular carcinoma from mass spectrometry data", J. Protoeme Res., 9, pp.104~112 (2009)
87. Froehlich, J. W., "Nano-LC–MS", MS of glycopeptides produced by nonspecific proteolysis enables rapid and extensive site-specific glycosylation determination, 2011, pp.83, 5541~5547
88. Thaysen-Andersen, M., "Investigating the biomarker potential of glycoproteins using comparative glycoprofiling-application to tissue inhibitor of metalloproteinases- 1, Biochimica et Biophysica Acta (BBA) - Proteins &amp", Proteomics, 1784, pp.455~463 (2008)

관련 논문AI추천