A report of 10 unrecorded bacterial species of Korea, isolated from agricultural soil in 2022
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초록
In 2022, research for native prokaryotic species in Korea reported 10 unrecorded bacterial strains affiliated to phyla Actinomycetota, Bacillota, and Pseudomonadota. The strains formed monophyletic clades with the most closely related species (with ≥98.7% sequence similarity) in the 16S rRNA gene sequencing. Among them, four species of the phylum Actinomycetota, two species of the phylum Bacillota, and four species of the phylum Pseudomonadota have not been reported in Korea, suggesting unrecorded species in Korea. Information on strains such as Gram staining reaction, colony and cell morphology, biochemical characteristics, and isolation sources were provided in the species description.
Abstract
In 2022, research for native prokaryotic species in Korea reported 10 unrecorded bacterial strains affiliated to phyla Actinomycetota, Bacillota, and Pseudomonadota. The strains formed monophyletic clades with the most closely related species (with ≥98.7% sequence similarity) in the 16S rRNA gene sequencing. Among them, four species of the phylum Actinomycetota, two species of the phylum Bacillota, and four species of the phylum Pseudomonadota have not been reported in Korea, suggesting unrecorded species in Korea. Information on strains such as Gram staining reaction, colony and cell morphology, biochemical characteristics, and isolation sources were provided in the species description.
참고문헌 (13)
- Doetsch RN, "Manual of Methods for General Bacteriology", pp.21~33 (1981), American Society for Microbiology
- Joseph Felsenstein, "Confidence Limits on Phylogenies: An Approach Using the Bootstrap", Evolution, 39(4), pp.783~791 (1985), Oxford University Press (OUP)[DOI]
- Beile Gao, "Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria", International Journal of Systematic and Evolutionary Microbiology, 55(6), pp.2401~2412 (2005), Microbiology Society[DOI]
- Ji Yeon Han, "A report on 20 unrecorded bacterial species of Korea isolated from soil in 2021", Journal of Species Research, 11(4), pp.310~320 (2022), 국립생물자원관[DOI]
- 장석원, "A report of 12 unrecorded bacterial species isolated from Suncheon Bay in Korea", 환경생물, 40(4), pp.405~412 (2022), 한국환경생물학회
- Motoo KIMURA, "The neutral theory of molecular evolution: A review of recent evidence.", The Japanese Journal of Genetics, 66(4), pp.367~386 (1991), Genetics Society of Japan[DOI]
- Sudhir Kumar, "MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms", Molecular Biology and Evolution, 35(6), pp.1547~1549 (2018), Oxford University Press (OUP)[DOI]
- Lawson PA, "The Bifidobacteria and Related Organisms", pp.1~8 (2018), Academic Press
- Shamsun Nahar, "Report on 30 unrecorded bacterial species of the phylum Firmicutes isolated from Korea in 2016", Journal of Species Research, 7(1), pp.50~59 (2018), 국립생물자원관[DOI]
- Elmar Pruesse, "SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes", Bioinformatics, 28(14), pp.1823~1829 (2012), Oxford University Press (OUP)[DOI]
- Saitou N, "The neighbor-joining method: a new method for reconstructing phylogenetic trees", Mol. Biol. Evol, 4, pp.406~425 (1987)[DOI]
- 성치남, "Taxonomic hierarchy of the phylum Proteobacteria and Korean indigenous novel Proteobacteria species", Journal of Species Research, 8(2), pp.197~214 (2019), 국립생물자원관[DOI]
- Seok-Hwan Yoon, "Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies", International Journal of Systematic and Evolutionary Microbiology, 67(5), pp.1613~1617 (2017), Microbiology Society[DOI]