본문 바로가기
KERD
논문KCI 등재

A report of 24 unrecorded bacterial species in Korea belonging to the Phyla Proteobacteria and Bacteroidetes isolated in 2020

0

조회

0

다운로드

0

인용

0

참고문헌

키워드

주제분류생물학

초록

In 2020, 24 bacterial strains were isolated from algae, kudzu leaf, mud, pine cone, seashore sand, sea water, soil, tidal flat, and wetland from the Republic of Korea. Isolated bacterial strains were identified based on 16S rRNA gene sequences, and those exhibiting at least 98.7% sequence similarity with known bacterial species, but not reported in Korea, were highlighted as unrecorded species. These isolates were allocated to the phyla Bacteroidetes and Proteobacteria as unrecorded species in Korea. The four Bacteroidetes strains were classified into the families Chitinophagaceae, Flavobacteriaceae, and Sphingobacteriaceae (of the orders Chitinophagales, Flavobacteriales, and Sphingobacteriales, respectively). The 20 Proteobacteria strains belonged to the Aeromonadaceae, Marinobacter, Microbulbiferaceae, Enterobacteriaceae, Erwiniaceae, Morganellaceae, Yersiniaceae, Lysobacteraceae, Halomonadaceae, Moraxellaceae, Pseudomonadaceae, Steroidobacteraceae, Xanthomonadaceae, and Myxococcaceae (of the orders Aeromonadales, Alteromonadales, Cellvibrionales, Enterobacterales, Lysobacterales, Oceanospirillales, Pseudomonadales, Steroidobacter, Xanthomonadales, and Myxococcales). This study focused on the description of 24 unreported bacterial species in Korea in the phyla Bacteroidetes and Proteobacteria belonging to six classes.

Abstract

In 2020, 24 bacterial strains were isolated from algae, kudzu leaf, mud, pine cone, seashore sand, sea water, soil, tidal flat, and wetland from the Republic of Korea. Isolated bacterial strains were identified based on 16S rRNA gene sequences, and those exhibiting at least 98.7% sequence similarity with known bacterial species, but not reported in Korea, were highlighted as unrecorded species. These isolates were allocated to the phyla Bacteroidetes and Proteobacteria as unrecorded species in Korea. The four Bacteroidetes strains were classified into the families Chitinophagaceae, Flavobacteriaceae, and Sphingobacteriaceae (of the orders Chitinophagales, Flavobacteriales, and Sphingobacteriales, respectively). The 20 Proteobacteria strains belonged to the Aeromonadaceae, Marinobacter, Microbulbiferaceae, Enterobacteriaceae, Erwiniaceae, Morganellaceae, Yersiniaceae, Lysobacteraceae, Halomonadaceae, Moraxellaceae, Pseudomonadaceae, Steroidobacteraceae, Xanthomonadaceae, and Myxococcaceae (of the orders Aeromonadales, Alteromonadales, Cellvibrionales, Enterobacterales, Lysobacterales, Oceanospirillales, Pseudomonadales, Steroidobacter, Xanthomonadales, and Myxococcales). This study focused on the description of 24 unreported bacterial species in Korea in the phyla Bacteroidetes and Proteobacteria belonging to six classes.

참고문헌 (12)

  1. Felsenstein, J., "Confidence limits on phylogenies: an approach using the bootstrap", Evolution, 39, pp.783~791 (1985)
  2. Garrity, G.M., "Bergey’s Manual of Systematic Bacteriology, vol. 2 (The Proteobacteria), Part B (The Gammaproteobacteria)", pp.1~ (2005), Springer
  3. Hahnke, R.L., "Genome-based taxonomic classification of Bacteroidetes", Frontiers in Microbiology, 7, pp.2003~ (2016)
  4. Hall, T.A., "BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95", 98, Nucleic acids symposium series, pp.1999[DOI]
  5. Kersters, K., "The Prokaryotes" (2006), Springer
  6. Kimura, M., "The neutral theory of molecular evolution" (1983), Cambridge University Press
  7. Krieg, N.R., "Bergey’s Manual of Systematic Bacteriology. 4", pp.25~ (2010), Springer
  8. Kumar, S., "MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datadets", Molecular Biology and Evolution, 33, pp.1870~1874 (2016)
  9. Russell, A.B., "A type VI secretion-related pathway in Bacteroidetes mediates interbacterial antagonism", Cell Host & Microbe, 16(2), pp.227~236 (2014)
  10. Saitou, N., "The neighbor-joining method: a new method for reconstructing phylogenetic trees", Molecular Biology and Evolution, 4, pp.406~425 (1987)
  11. Thompson, J.D., "The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools", Nucleic Acids Research, 25(24), pp.4876~4882 (1997)
  12. Weisburg, W.G., "16S ribosomal DNA amplification for phylogenetic study", Journal of Bacteriology, 173, pp.697~703 (1991)

관련 논문AI추천

A report of 21 unrecorded bacterial species of Korea belonging to the phylum Bacteroidota isolated in 2021김명겸, 김승범, 전체옥, 차창준, Jung-Hoon Yoon, Ki-seong Joh, Won Yong Kim국립생물자원관 · Journal of Species Research2023 · 제12권 제3호A report of 39 unrecorded bacterial species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria isolated in 2018김명겸, 김승범, 김용석, 김원용, 성치남, 임완택, 전체옥, 차창준, Hana Yi, KISEONG JOH국립생물자원관 · Journal of Species Research2020 · 제9권 제4호A report of 31 unrecorded bacterial species in South Korea belonging to the class Gammaproteobacteria김승범, 배진우, 성치남, 윤정훈, 임완택, 장광엽, 전체옥, 정용택, 조기성, 조장천, 차창준국립생물자원관 · Journal of Species Research2016 · 제5권 제1호A report of 29 unrecorded bacterial species belonging to the phylum Bacteroidetes in Korea김승범, 배진우, 성치남, 윤정훈, 임완택, 장광엽, 전체옥, 조기성, 조상현, 조장천, 차창준국립생물자원관 · Journal of Species Research2017 · 제6권 제2호A report of 39 unrecorded bacterial species in Korea, belonging to the Betaproteobacteria and Gammaproteobacteria김승범, 성치남, 임완택, 조장천, Ahyoung Choi, CHANG-JUN CHA, Che Ok Jeon, Jin-Woo Bae, Jongsik Chun, Jung-Hoon Yoon, KISEONG JOH, Kwang-Yeop Jahng국립생물자원관 · Journal of Species Research2015 · 제4권 제2호A report on 30 unrecorded bacteria species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria in 2021김명겸, 김승범, 전체옥, Chang-Jun Cha, Jung-Hoon Yoon, Kiseong Joh, Wan-Taek Im, Won Yong Kim, YUNJEONGLEE국립생물자원관 · Journal of Species Research2023 · 제12권 제3호

이 간행물의 다른 논문 (10건)