본문 바로가기
KERD
논문KCI 등재

A report of 21 unrecorded bacterial species of Korea belonging to the phylum Bacteroidota isolated in 2021

2

조회

0

다운로드

0

인용

0

참고문헌

키워드

주제분류생물학

초록

During screening for indigenous prokaryotic species in Republic of Korea in 2021, a total of 21 bacterial strains assigned to the phylum Bacteroidota were isolated from a variety of environmental habitats including pine cone, seaweed, soil, sea sediment, brackish water and moss. Based on the 16S rRNA gene sequence similarity value of more than 98.7% and formation of a robust phylogenetic clade with the type strain of the closest bacterial species, it was found that the 21 strains belong to independent and recognized bacterial species. There has been no official report that the identified 21 species have been isolated in Republic of Korea up to date. Therefore, 16 species in six genera of two families in the order Flavobacteriales, two species in two genera of two families in the order Cytophagales, one species in one genus of one family in the order Chitinophagales and two species in one genus of one family in the order Sphingobacteriales are proposed as unrecorded species of the phylum Bacteroidota isolated in Republic of Korea. Their Gram reaction, colony and cell morphology, basic phenotypic characteristics, isolation source, taxonomic status, strain ID and other information are described in the species descriptions.

Abstract

During screening for indigenous prokaryotic species in Republic of Korea in 2021, a total of 21 bacterial strains assigned to the phylum Bacteroidota were isolated from a variety of environmental habitats including pine cone, seaweed, soil, sea sediment, brackish water and moss. Based on the 16S rRNA gene sequence similarity value of more than 98.7% and formation of a robust phylogenetic clade with the type strain of the closest bacterial species, it was found that the 21 strains belong to independent and recognized bacterial species. There has been no official report that the identified 21 species have been isolated in Republic of Korea up to date. Therefore, 16 species in six genera of two families in the order Flavobacteriales, two species in two genera of two families in the order Cytophagales, one species in one genus of one family in the order Chitinophagales and two species in one genus of one family in the order Sphingobacteriales are proposed as unrecorded species of the phylum Bacteroidota isolated in Republic of Korea. Their Gram reaction, colony and cell morphology, basic phenotypic characteristics, isolation source, taxonomic status, strain ID and other information are described in the species descriptions.

참고문헌 (34)

  1. Ao, L., "Flavobacterium arsenatis sp. nov., a novel arsenic-resistant bacterium from high-arsenic sediment", Int J Syst Evol Microbiol, 64, pp.3369~3374 (2014)
  2. Cho, J. C., "Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria", Appl Environ Microbiol, 70, pp.432~440 (2004)
  3. Connon, S. A., "High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates", Appl Environ Microbiol, 68, pp.3878~3885 (2002)
  4. Dahal, R. H., "Hymenobacter polaris sp. nov., a psychrotolerant bacterium isolated from an Arctic station", Int J Syst Evol Microbiol, 70, pp.4890~4896 (2020)
  5. de Beer, H., "Chryseobacterium vrystaatense sp. nov., isolated from raw chicken in a chicken-processing plant", Int J Syst Evol Microbiol, 55, pp.2149~2153 (2005)
  6. Delong, E. F., "Phylogenetic stains: Ribosomal RNA-based probes for the identification of single cells", Science, 243, pp.1360~1363 (1989)
  7. PHYLIP (phylogeny inference package)version 3.5. Distributed by the author, "Felsenstein, J", Department of Genome Sciences, University of Washington, ~ (1993)
  8. García-López, M., "Analysis of 1, 000 type-strain genomes improves taxonomic classification of Bacteroidetes", Front Microbiol, 10, pp.2083~ (2019)
  9. Giovannoni, S. J., "Genetic diversity in Sargasso Sea bacterioplankton", Nature, 345, pp.60~63 (1990)
  10. Hameed, A., "Hanstruepera neustonica gen. nov., sp. nov., a zeaxanthin-producing member of the family Flavobacteriaceae isolated from estuarine water, and emendation of Sediminibacter furfurosus Khan et al. 2007emend. Kwon et al. 2014, Mangrovimonas yunxiaonensis Li et al. 2013, Antarcticimonas flava Yang et al. 2009 and Hoppeia youngheungensis Kwon et al. 2014", Int J Syst Evol Microbiol, 65, pp.336~345 (2013)
  11. Hantsis-Zacharov, E., "Chryseobacterium oranimense sp. nov., a psychrotolerant, proteolytic and lipolytic bacterium isolated from raw cow’s milk", Int J Syst Evol Microbiol, 58, pp.2635~2639 (2008)
  12. Holmes, B., "DNA-DNA hybridization study of strains of Chryseobacterium, Elizabethkingia and Empedobacter and of other usually indole-producing non-fermenters of CDC groups IIc, IIe, IIh and IIi, mostly from human clinical sources, and proposals of Chryseobacterium bernardetii sp. nov., Chryseobacterium carnis sp. nov., Chryseobacterium lactis sp. nov., Chryseobacterium nakagawai sp. nov. and Chryseobacterium taklimakanense comb. nov", Int J Syst Evol Microbiol, 63, pp.4639~4662 (2013)
  13. Hugo, C. J., "Chryseobacterium joostei sp. nov., isolated from the dairy environment", Int J Syst Evol Microbiol, 53, pp.771~777 (2003)
  14. Indu, B., "Chryseobacterium candidae sp. nov., isolated from a yeast (Candida tropicalis)", Int J Syst Evol Microbiol, 70, pp.93~99 (2020)
  15. Jackson, S. A., "Maribacter spongiicola sp. nov. and Maribacter vaceletii sp. nov., isolated from marine sponges, and emended description of the genus Maribacter", Int J Syst Evol Microbiol, 65, pp.2097~2103 (2015)
  16. Jukes, T. H., "Evolution of protein molecules, Mammalian Protein Metabolism", pp.21~132 (1969), Academic Press
  17. Kämpfer, P., "Flavobacterium panici sp. nov. isolated from the rhizosphere of the switchgrass Panicum virgatum", Int J Syst Evol Microbiol, 70, pp.5824~5831 (2020)
  18. Králová, S., "Flavobacterium chryseum sp. nov. and Flavobacterium psychroterrae sp. nov., novel environmental bacteria isolated from Antarctica", Int J Syst Evol Microbiol, 68, pp.3132~3139 (2018)
  19. Krieg, N. R., "Phylum XIV. Bacteroidetes phyl. nov. Bergey’s Manual of Systematic Bacteriology", pp.25~ (2010), Springer
  20. Li, D. D., "Arcticibacterium luteifluviistationis gen. nov., sp. nov., isolated from Arctic seawater", Int J Syst Evol Microbiol, 7, pp.664~669 (2017)
  21. Li, Z., "Chryseobacterium vietnamense sp. nov., isolated from forest soil", Int J Syst Evol Microbiol, 62, pp.827~831 (2012)
  22. Lv, Y. Y., "Chitinophaga varians sp. nov., isolated from forest soil", Int J Syst Evol Microbiol, 68, pp.2139~2144 (2018)
  23. Nedashkovskaya, O. I., "Lacinutrix algicola sp. nov. and Lacinutrix mariniflava sp. nov., two novel marine algaassociated bacteria and emended description of the genus Lacinutrix", Int J Syst Evol Microbiol, 58, pp.2694~2698 (2008)
  24. Oren, A., "Valid publication of the names of forty-two phyla of prokaryotes", Int J Syst Evol Microbiol, 71, pp.005056~ (2021)
  25. Saitou, N., "The neighbor-joining method:a new method for reconstructing phylogenetic trees", Mol Biol Evol, 4, pp.406~425 (1987)
  26. Sun, L., "Lentimicrobium saccharophilum gen. nov., sp. nov., a strictly anaerobic bacterium representing a new family in the phylum Bacteroidetes, and proposal of Lentimicrobiaceae fam. nov", Int J Syst Evol Microbiol, 66, pp.2635~2642 (2016)
  27. Thompson, J. D., "Clustal W : improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positionspecific gap penalties and weight matrix choice", Nucleic Acids Res, 22, pp.4673~4680 (1994)
  28. Thomas, F., "Environmental and gut bacterioidetes: the food connection", Front Microbiol, 2, pp.93~ (2011)
  29. Urai, M., "Mucilaginibacter kameinonensis sp., nov., isolated from garden soil", Int J Syst Evol Microbiol, 58, pp.2046~2050 (2008)
  30. Yoon, J., "Wenyingzhuangia aestuarii sp. nov., A marine bacterium of the family Flavobacteriaceae isolated from an estuary", Curr Microbiol, 72, pp.397~403 (2016)
  31. Yoon, J. -H., "Ohtaekwangia koreensis gen. nov., sp. nov. and Ohtaekwangia kribbensis sp. nov., isolated from marine sand, deep-branching members of the phylum Bacteroidetes", Int J Syst Evol Microbiol, 61, pp.1066~1072 (2011)
  32. Yoon, S. H., "Introducing EzBioCloud: A taxonomically united database of 16S rRNA and whole genome assemblies", Int J Syst Evol Microbiol, 67, pp.1613~1617 (2017)
  33. Zamora, L., "Flavobacterium oncorhynchi sp. nov., a new species isolated from rainbow trout (Oncorhynchus mykiss)", Syst Appl Microbiol, 35, pp.86~91 (2012)
  34. Zhou, Z., "Mucilaginibacter terrenus sp. nov., isolated from manganese mine soil", Int J Syst Evol Microbiol, 69, pp.3074~3079 (2019)

관련 논문AI추천

A report of 29 unrecorded bacterial species belonging to the phylum Bacteroidetes in Korea김승범, 배진우, 성치남, 윤정훈, 임완택, 장광엽, 전체옥, 조기성, 조상현, 조장천, 차창준국립생물자원관 · Journal of Species Research2017 · 제6권 제2호A report of 24 unrecorded bacterial species in Korea belonging to the Phyla Proteobacteria and Bacteroidetes isolated in 2020김명겸, 김승범, 김원용, 김주영, 성치남, 윤정훈, 임완택, 전체옥, 조기성, 차창준, Taegun Seo국립생물자원관 · Journal of Species Research2022 · 제11권 제3호A report of 36 unrecorded bacterial species belonging to the phyla Actinomycetota, Bacillota, Bacteroidota, Deinococcota, and Pseudomonadota isolated in Republic of Korea김명겸, 김승범, 서태근, 전체옥, 조장천, Chang-Jun Cha, Chi-NamSeong, Jin-Woo Bae, Jung-Hoon Yoon, Wan-Taek Im, Wonyong Kim국립생물자원관 · Journal of Species Research2023 · 제12권 제4호A report of 156 unrecorded bacterial species of Republic of Korea belonging to the phyla Acidobacteriota, Deinococcota, Actinomycetota, Bacillota, Bacteroidota, and Pseudomonadota isolated in 2022김명겸, 김승범, 서태근, 전체옥, Chang-Jun Cha, Jung-Hoon Yoon, KISEONG JOH, Wan-Taek Im, Wonyong Kim국립생물자원관 · Journal of Species Research2023 · 제12권 제4호A report of 17 unrecorded bacterial species of Korea belonging to the phylum Bacteroidetes김명겸, 배진우, 성치남, 윤정훈, 이순동, 이하나, 조기성, 조장천, 차창준국립생물자원관 · Journal of Species Research2018 · 제7권 제3호A report of 21 unrecorded bacterial species belonging to the phyla Bacillota and Verrucomicrobiota in Korea전체옥, Chang-Jun Cha, Jae Kyeong Lee, Ju Hye Baek, Jung-Hoon Yoon, Myung Kyum Kim, Taegun Seo, Wonyong Kim국립생물자원관 · Journal of Species Research2023 · 제12권 제1호

이 간행물의 다른 논문 (12건)