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통일형 벼 이앙 후 유묘기 재배안정성 증진을 위한 저온생장성 관련 QTL 탐색

Identification of QTLs Related to Plant Growth at Low Temperatures in the Seedling Stage of Tongil Type Rice after Transplanting

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초록

In Asia, where climate change is increasing the damage caused by cold stress, it is crucial to cultivate varieties with enhanced cold tolerance. In this study, the Tongil variety ‘Hanareum2’ was crossed with the Japonica variety ‘Unkwang’ to improve plant growth ability at low temperatures during the seedling stage. This led to the development of 234 recombinant inbred line (RIL) populations, and a linkage map was constructed using 249 single nucleotide polymorphism (SNP) markers. The RIL populations were transplanted to the field one month earlier than the standard transplanting period, and plant height (PH), leaf number (LN), and dry weight (DW) were measured to identify quantitative trait loci (QTL) associated with plant growth ability at low temperatures during the seedling stage. QTLs related to cold tolerance, particularly those carrying the ‘Unkwang’ allele, were identified in the PH and DW traits. For PH, the QTLs qPH1, qPH5, and qPH8 were located on chromosomes 1, 5, and 8, respectively. Regarding DW, the QTLs qDW1, qDW8, and qDW9 were identified on chromosomes 1, 8, and 9. For the LN trait, qLN3 carrying the ‘Hanareum2’ allele was located on chromosome 3. If the identified QTLs are utilized, they can be incorporated into breeding programs for plant growth at low temperatures during the seedling stage.

Abstract

In Asia, where climate change is increasing the damage caused by cold stress, it is crucial to cultivate varieties with enhanced cold tolerance. In this study, the Tongil variety ‘Hanareum2’ was crossed with the Japonica variety ‘Unkwang’ to improve plant growth ability at low temperatures during the seedling stage. This led to the development of 234 recombinant inbred line (RIL) populations, and a linkage map was constructed using 249 single nucleotide polymorphism (SNP) markers. The RIL populations were transplanted to the field one month earlier than the standard transplanting period, and plant height (PH), leaf number (LN), and dry weight (DW) were measured to identify quantitative trait loci (QTL) associated with plant growth ability at low temperatures during the seedling stage. QTLs related to cold tolerance, particularly those carrying the ‘Unkwang’ allele, were identified in the PH and DW traits. For PH, the QTLs qPH1, qPH5, and qPH8 were located on chromosomes 1, 5, and 8, respectively. Regarding DW, the QTLs qDW1, qDW8, and qDW9 were identified on chromosomes 1, 8, and 9. For the LN trait, qLN3 carrying the ‘Hanareum2’ allele was located on chromosome 3. If the identified QTLs are utilized, they can be incorporated into breeding programs for plant growth at low temperatures during the seedling stage.

참고문헌 (27)

  1. Bai X, "Genome-wide association analysis reveals different genetic control in panicle architecture between indica and japonica rice", Plant Genome, 9, pp.1~10 (2016)
  2. Churchill GA, "Empirical threshold values for quantitative trait mapping", Genetics, 138, pp.963~971 (1994)
  3. Cruz RPD, "Avoiding damage and achieving cold tolerance in rice plants", Food Energy Secur, 2, pp.96~119 (2013)
  4. Deng X, "Locating QTLs controlling overwintering seedling rate in perennial glutinous rice 89-1(Oryza sativa L. )", Genes Genomics, 40, pp.1351~1361 (2018)
  5. Hyun UJ, "Optimization of temperature regime to screen cold tolerant rice seedlings", Plant Breed Biotech, 4, pp.176~187 (2016)
  6. Islam MA, "Characterization of Glossy1-homologous genes in rice involved in leaf wax accumulation and drought resistance", Plant Mol Biol, 70, pp.443~456 (2009)
  7. Ito Y, "Functional analysis of rice DREB1", CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice, 2006, pp.47, 141~153
  8. Kim TH, "QTL Analysis for Cold Tolerance at Seedling Stage using Hanareum2", Unkwang Recombinant Inbreeding Lines in Rice, 2017, pp.49, 334~343
  9. Kosambi DD, "Caste and class in India", Sci Soc, 8, pp.243~249 (1944)
  10. Lee MH, "Low temperature tolerance in rice: the Korean experience", Increased Lowland Rice Production in the Mekong Region. ACIAR Proceedings, pp.109~117 (2001)
  11. Lin D, "Rice TCM1 encoding a component of the TAC complex is required for chloroplast development under cold stress", Plant Genome, 11, pp.160065~ (2018)
  12. Liu C, "Early selection of bZIP73 facilitated adaptation of japonica rice to cold climates", Nat Commun, 9, pp.3302~ (2018)
  13. Liu Q, "Comprehensive analysis of rice laccase gene(OsLAC)family and ectopic expression of OsLAC10 enhances tolerance to copper stress in Arabidopsis", Int J Mol Sci, 18, pp.209~ (2017)
  14. Lu CA, "DEAD-box RNA helicase 42 plays a critical role in pre-mRNA splicing under cold stress", Plant Physiol, 182, pp.255~271 (2020)
  15. Ma Y, "COLD1 confers chilling tolerance in rice", Cell, 160, pp.1209~1221 (2015)
  16. Mao D, "Multiple cold resistance loci confer the high cold tolerance adaptation of Dongxiang wild rice(Oryza rufipogon)to its high-latitude habitat", Theor Appl Geneti, 128, pp.1359~1371 (2015)
  17. Meng L, "QTL IciMapping : integrated software for genetic linkage map construction and quantitative trait locus mapping in biparental populations", Crop J, 3, pp.269~283 (2015)
  18. Morsy MR, "The OsLti6 genes encoding low-molecular-weight membrane proteins are differentially expressed in rice cultivars with contrasting sensitivity to low temperature", Gene, 344, pp.171~180 (2005)
  19. Murray MG, "Rapid isolation of high molecular weight plant DNA", Nucleic Acids Res, 8, pp.4321~4326 (1980)
  20. Sales E, "Genome wide association analysis of cold tolerance at germination in temperate japonica rice(Oryza sativa L. )varieties", PLoS One, 12, pp.e0183416~ (2017)
  21. Shim KC, "Identification of QTLs for cold tolerance at seedling stage using a population derived from an inter-specific cross in rice", Plant Breed Biotech, 10, pp.282~289 (2022)
  22. Sun J, "Identification of a cold-tolerant locus in rice(Oryza sativa L. )using bulked segregant analysis with a next-generation sequencing strategy", Rice, 11, pp.24~ (2018)
  23. Thapa R, "Genome-wide association mapping to identify genetic loci for cold tolerance and cold recovery during germination in rice", Frontiers in Genetics, 11, pp.22~ (2020)
  24. Thomson MJ, "High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform", Mol Breed, 29, pp.875~886 (2012)
  25. Wright MH, "ALCHEMY : A reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations", Bioinformatics, 26, pp.2952~2960 (2010)
  26. Fundamentals of rice crop science, "Yoshida S", International Rice Research Institute, 77~81 (1981)
  27. Zhang Q, "Rice and cold stress : Methods for its evaluation and summary of cold tolerance-related quantitative trait loci", Rice, 7, pp.24~ (2014)

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