The Yin and Yang of RNA surveillance in B lymphocytes and antibody-secreting plasma cells

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참고문헌 (75)

1. Li S, "Nonsense surveillance in lymphocytes?", Immunity, 8, pp.135~141 (1998)
2. Aoufouchi S, "Nonsense mutations inhibit RNA splicing in a cell-free system : recognition of mutant codon is independent of protein synthesis", Cell, 85, pp.415~422 (1996)
3. Bühler M, "Alternative splicing induced by nonsense mutations in the immunoglobulin mu VDJ exon is independent of truncation of the open reading frame", RNA, 11, pp.139~146 (2005)
4. Bühler M, "Transcriptional silencing of nonsense codon-containing immunoglobulin minigenes", Mol Cell, 18, pp.307~317 (2005)
5. Chemin G, "Multiple RNA surveillance mechanisms cooperate to reduce the amount of nonfunctional Ig kappa transcripts", J Immunol Baltim Md 1950, 184, pp.5009~5017 (2010)
6. Lozano F, "Low cytoplasmic mRNA levels of immunoglobulin kappa light chain genes containing nonsense codons correlate with inefficient splicing", EMBO J, 13, pp.4617~4622 (1994)
7. Mendell JT, "Separable roles for rent1", hUpf1 in altered splicing and decay of nonsense transcripts, 2002, pp.298, 419~422
8. Sperling J, "Nuclear surveillance of RNA polymerase II transcripts", RNA Biol, 5, pp.220~224 (2008)
9. Tinguely A, "Cross talk between immunoglobulin heavy-chain transcription and RNA surveillance during B cell development", Mol Cell Biol, 32, pp.107~117 (2012)
10. Wachtel C, "Stop codon-mediated suppression of splicing is a novel nuclear scanning mechanism not affected by elements of protein synthesis and NMD", RNA, 10, pp.1740~1750 (2004)
11. Wang J, "Alternatively spliced TCR mRNA induced by disruption of reading frame", Science, 297, pp.108~110 (2002)
12. Wang J, "Nonsense-associated altered splicing : a frame-dependent response distinct from nonsense-mediated decay", Mol Cell, 10, pp.951~957 (2002)
13. 황정욱, "When a ribosome encounters a premature termination codon", BMB Reports, 46(1), pp.9~16 (2013), 생화학분자생물학회
14. Frischmeyer-Guerrerio PA, "Perturbation of thymocyte development in nonsense-mediated decay(NMD)-deficient mice", Proc Natl Acad Sci U S A, 108, pp.10638~10643 (2011)
15. Weischenfeldt J, "NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements", Genes Dev, 22, pp.1381~1396 (2008)
16. Srour N, "A plasma cell differentiation quality control ablates B cell clones with biallelic Ig rearrangements and truncated Ig production", J Exp Med, 213, pp.109~122 (2016)
17. Jung D, "Mechanism and control of V(D)J recombination at the immunoglobulin heavy chain locus", Annu Rev Immunol, 24, pp.541~570 (2006)
18. Mombaerts P, "RAG-1-deficient mice have no mature B and T lymphocytes", Cell, 68, pp.869~877 (1992)
19. Shinkai Y, "RAG-2-deficient mice lack mature lymphocytes owing to inability to initiate V(D)J rearrangement", Cell, 68, pp.855~867 (1992)
20. Alt FW, "Joining of immunoglobulin heavy chain gene segments : implications from a chromosome with evidence of three D-JH fusions", Proc Natl Acad Sci U S A, 79, pp.4118~4122 (1982)
21. Roth DB, "Comparison of filler DNA at immune, nonimmune, and oncogenic rearrangements suggests multiple mechanisms of formation", Mol Cell Biol, 9, pp.3049~3057 (1989)
22. Desiderio SV, "Insertion of N regions into heavy-chain genes is correlated with expression of terminal deoxytransferase in B cells", Nature, 311, pp.752~755 (1984)
23. Gilfillan S, "Mice lacking TdT : mature animals with an immature lymphocyte repertoire", Science, 261, pp.1175~1178 (1993)
24. Kallenbach S, "Three lymphoid-specific factors account for all junctional diversity characteristic of somatic assembly of T-cell receptor and immunoglobulin genes", Proc Natl Acad Sci U S A, 89, pp.2799~2803 (1992)
25. Komori T, "Lack of N regions in antigen receptor variable region genes of TdT-deficient lymphocytes", Science, 261, pp.1171~1175 (1993)
26. Lafaille JJ, "Junctional sequences of T cell receptor gamma delta genes : implications for gamma delta T cell lineages and for a novel intermediate of V-(D)-J joining", Cell, 59, pp.859~870 (1989)
27. Lewis SM, "P nucleotide insertions and the resolution of hairpin DNA structures in mammalian cells", Proc Natl Acad Sci U S A, 91, pp.1332~1336 (1994)
28. McCormack WT, "Chicken IgL gene rearrangement involves deletion of a circular episome and addition of single nonrandom nucleotides to both coding segments", Cell, 56, pp.785~791 (1989)
29. Outters P, "Long-Range Control of V(D)J Recombination & Allelic Exclusion : Modeling Views", Adv Immunol, 128, pp.363~413 (2015)
30. ten Boekel E, "The status of Ig loci rearrangements in single cells from different stages of B cell development", Int Immunol, 7, pp.1013~1019 (1995)
31. Ehlich A, "Analysis of the B-cell progenitor compartment at the level of single cells", Curr Biol CB, 4, pp.573~583 (1994)
32. Mostoslavsky R, "The lingering enigma of the allelic exclusion mechanism", Cell, 118, pp.539~544 (2004)
33. Gutzeit C, "The enigmatic function of IgD : some answers at last", Eur J Immunol, 48, pp.1101~1113 (2018)
34. Honjo T, "AID to overcome the limitations of genomic information", Nat Immunol, 6, pp.655~661 (2005)
35. Pilzecker B, "Mutating for Good : DNA Damage Responses During Somatic Hypermutation", Front Immunol, 10, pp.438~ (2019)
36. Goossens T, "Frequent occurrence of deletions and duplications during somatic hypermutation : Implications for oncogene translocations and heavy chain disease", Proc Natl Acad Sci U S A, 95, pp.2463~2468 (1998)
37. Yeap LS, "Sequence-Intrinsic Mechanisms that Target AID Mutational Outcomes on Antibody Genes", Cell, 163, pp.1124~1137 (2015)
38. Manser T, "The roles of antibody variable region hypermutation and selection in the development of the memory B-cell compartment", Immunol Rev, 162, pp.183~196 (1998)
39. Delpy L, "Transcription-dependent somatic hypermutation occurs at similar levels on functional and nonfunctional rearranged IgH alleles", J Immunol Baltim Md 1950, 173, pp.1842~1848 (2004)
40. Allen CD, "Germinal-center organization and cellular dynamics", Immunity, 27, pp.190~202 (2007)
41. Stewart I, "Germinal Center B Cells Replace Their Antigen Receptors in Dark Zones and Fail Light Zone Entry when Immunoglobulin Gene Mutations are Damaging", Immunity, 49, pp.477~489 (2018)[DOI]
42. Victora GD, "Germinal centers", Annu Rev Immunol, 30, pp.429~457 (2012)
43. Manis JP, "Mechanism and control of class-switch recombination", Trends Immunol, 23, pp.31~39 (2002)
44. Nutt SL, "The generation of antibody-secreting plasma cells", Nat Rev Immunol, 15, pp.160~171 (2015)
45. Todd DJ, "XBP1 governs late events in plasma cell differentiation and is not required for antigen-specific memory B cell development", J Exp Med, 206, pp.2151~2159 (2009)
46. Takagaki Y, "The polyadenylation factor CstF-64 regulates alternative processing of IgM heavy chain pre-mRNA during B cell differentiation", Cell, 87, pp.941~952 (1996)
47. Stalder L, "Transcriptional silencing of nonsense codon-containing immunoglobulin micro genes requires translation of its mRNA", J Biol Chem, 282, pp.16079~16085 (2007)
48. Ashi MO, "Physiological and druggable skipping of immunoglobulin variable exons in plasma cells", Cell Mol Immunol, 16, pp.810~819 (2018)
49. Daly J, "Transcription of productive and nonproductive VDJ-recombined alleles after IgH allelic exclusion", EMBO J, 26, pp.4273~4282 (2007)
50. Delpy L, "RNA surveillance down-regulates expression of nonfunctional kappa alleles and detects premature termination within the last kappa exon", Proc Natl Acad Sci U S A, 101, pp.7375~7380 (2004)
51. Holwerda SJ, "Allelic exclusion of the immunoglobulin heavy chain locus is independent of its nuclear localization in mature B cells", Nucleic Acids Res, 41, pp.6905~6916 (2013)
52. Eberle AB, "Equal transcription rates of productively and nonproductively rearranged immunoglobulin mu heavy chain alleles in a pro-B cell line", RNA, 15, pp.1021~1028 (2009)
53. Fabrice Lejeune, "Nonsense-mediated mRNA decay at the crossroads of many cellular pathways", BMB Reports, 50(4), pp.175~185 (2017), 생화학분자생물학회
54. Lejeune F, "Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells", Curr Opin Cell Biol, 17, pp.309~315 (2005)
55. Mühlemann O, "Precursor RNAs harboring nonsense codons accumulate near the site of transcription", Mol Cell, 8, pp.33~43 (2001)
56. Singh AK, "The RNA helicase UPF1 associates with mRNAs co-transcriptionally and is required for the release of mRNAs from gene loci", ELife, 8, pp.e41444~ (2019)
57. Chang YF, "The nonsense-mediated decay RNA surveillance pathway", Annu Rev Biochem, 76, pp.51~74 (2007)
58. Karousis ED, "Nonsense-Mediated mRNA Decay Begins Where Translation Ends", Cold Spring Harb Perspect Biol, 11, pp.a032862~ (2019)
59. Baumann B, "Consequences of frameshift mutations at the immunoglobulin heavy chain locus of the mouse", EMBO J, 4, pp.351~359 (1985)
60. Connor A, "On the linkage between RNA processing and RNA translatability", J Biol Chem, 269, pp.25178~25184 (1994)
61. Jäck HM, "Translation affects immunoglobulin mRNA stability", Eur J Immunol, 19, pp.843~847 (1989)
62. Gudikote JP, "RNA splicing promotes translation and RNA surveillance", Nat Struct Mol Biol, 12, pp.801~809 (2005)
63. Eberle AB, "Posttranscriptional Gene Regulation by Spatial Rearrangement of the 3′ Untranslated Region", PLoS Biol, 6, pp.e92~ (2008)
64. Kim YK, "UPFront and center in RNA decay : UPF1 in nonsense-mediated mRNA decay and beyond", RNA N Y N, 25, pp.407~422 (2019)
65. Neu-Yilik G, "Dual function of UPF3B in early and late translation termination", EMBO J, 36, pp.2968~2986 (2017)
66. Maquat LE, "NASty effects on fibrillin pre-mRNA splicing : another case of ESE does it, but proposals for translation-dependent splice site choice live on", Genes Dev, 16, pp.1743~1753 (2002)
67. Valentine CR, "The association of nonsense codons with exon skipping", Mutat Res, 411, pp.87~117 (1998)
68. Nogués G, "Control of alternative pre-mRNA splicing by RNA Pol II elongation : faster is not always better", IUBMB Life, 55, pp.235~241 (2003)
69. Cenci S, "Managing and exploiting stress in the antibody factory", FEBS Lett, 581, pp.3652~3657 (2007)
70. Cogné M, "Exon skipping without splice site mutation accounting for abnormal immunoglobulin chains in nonsecretory human myeloma", Eur J Immunol, 23, pp.1289~1293 (1993)
71. Cogné M, "Gene mutations and alternate RNA splicing result in truncated Ig L chains in human gamma H chain disease", J Immunol Baltim Md 1950, 141, pp.1738~1744 (1988)
72. Cogné M, "Structurally abnormal immunoglobulins in human immunoproliferative disorders", Blood, 79, pp.2181~2195 (1992)
73. Bühler M, "Efficient downregulation of immunoglobulin mu mRNA with premature translation-termination codons requires the 5’-half of the VDJ exon", Nucleic Acids Res, 32, pp.3304~3315 (2004)
74. Inácio A, "Nonsense mutations in close proximity to the initiation codon fail to trigger full nonsense-mediated mRNA decay", J Biol Chem, 279, pp.32170~32180 (2004)
75. Peixeiro I, "Interaction of PABPC1 with the translation initiation complex is critical to the NMD resistance of AUG-proximal nonsense mutations", Nucleic Acids Res, 40, pp.1160~1173 (2012)

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