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Cloning and characterization of ADPribosylation factor 1b from the olive flounder Paralichthys olivaceus

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키워드

주제분류수산학

초록

Small GTPases are well known as one of the signal transduction factors of immune systems. The ADP-ribosylation factors (ARFs) can be classified into three groups based on the peptide sequence, protein molecular weight, gene structure, and phylogenetic analysis. ARF1 recruits coat proteins to the Golgi membranes when it is bound to GTP. The class I duplicated ARF gene was cloned and characterized from the olive flounder (Paralichthys olivaceus) for this study. PoARF1b contains the GTP-binding motif and the switch 1 and 2 regions. PoARF1b and PoARF1b mutants were transfected into a Hirame natural embryo cell to determine the distribution of its GDP/GTP-bound state; consequently, it was confirmed that PoARF1b associates with the Golgi body when it is in a GTP-binding form. The results of the qPCR-described PoARF1b were expressed for all of the P. olivaceus tissues. The authors plan to study the gene expression patterns of PoARF1b in terms of immunity challenges.

Abstract

Small GTPases are well known as one of the signal transduction factors of immune systems. The ADP-ribosylation factors (ARFs) can be classified into three groups based on the peptide sequence, protein molecular weight, gene structure, and phylogenetic analysis. ARF1 recruits coat proteins to the Golgi membranes when it is bound to GTP. The class I duplicated ARF gene was cloned and characterized from the olive flounder (Paralichthys olivaceus) for this study. PoARF1b contains the GTP-binding motif and the switch 1 and 2 regions. PoARF1b and PoARF1b mutants were transfected into a Hirame natural embryo cell to determine the distribution of its GDP/GTP-bound state; consequently, it was confirmed that PoARF1b associates with the Golgi body when it is in a GTP-binding form. The results of the qPCR-described PoARF1b were expressed for all of the P. olivaceus tissues. The authors plan to study the gene expression patterns of PoARF1b in terms of immunity challenges.

참고문헌 (31)

  1. Ahn SJ, "Molecular cloning, tissue distribution and enzymatic characterization of cathepsin X from olive flounder(Paralichthys olivaceus)", Comp Biochem Physiol Part B Biochem Mol Biol, 151(2), pp.203~212 (2008)
  2. Amor JC, "Structure of the human ADPribosylation factor 1 complexed with GDP", Nature, 372(6507), pp.704~708 (1994)
  3. Balch WE, "ADP-ribosylation factor is required for vesicular trafficking between the endoplasmic reticulum and the cis-Golgi compartment", J Biol Chem, 267(18), pp.13053~13061 (1992)
  4. Chavrier P, "The role of ARF and Rab GTPases in membrane transport", Curr Opin Cell Biol, 11(4), pp.466~475 (1999)
  5. D’Souza-Schorey C, "ARF proteins : roles in membrane traffic and beyond", Nat Rev Mol Cell Biol, 7(5), pp.347~358 (2006)
  6. Flicek P, "Ensembl 2012", Nucleic Acids Res, pp.gkr991~ (2011)
  7. Giulietti A, "An overview of real-time quantitative PCR : applications to quantify cytokine gene expression", Methods, 25(4), pp.386~401 (2001)
  8. Hall T., "BioEdit : an important software for molecular biology", GERF Bull Biosci, 2(1), pp.6~ (2011)
  9. Jee BY, "Morphology and biology of parasite responsible for scuticociliatosis of cultured olive flounder Paralichthys olivaceus", Dis Aquat Org, 47(1), pp.49~55 (2001)
  10. Johnson DS, "Ras family of small GTPases in immunity and inflammation", Curr Opin Pharmacol, 12(4), pp.458~463 (2012)
  11. embryo cell lines, "Bulletin of Fisheries Sciences", 2001, ~, pp.Hokkaido University (Japan)
  12. Liu W, "Ran GTPase regulates hemocytic phagocytosis of shrimp by interaction with myosin", J Proteome Res, 8(3), pp.1198~1206 (2009)
  13. Luo JQ, "Functional association between Arf and RalA in active phospholipase D complex", Proc Natl Acad Sci, 95(7), pp.3632~3637 (1998)
  14. Ma J, "Characterization of two novel ADP ribosylation factors from the shrimp Marsupenaeus japonicus", Fish Shellfish Immunol, 29(6), pp.956~962 (2010)
  15. Myers KR, "Regulation of actin cytoskeleton dynamics by Arf-family GTPases", Trends Cell Biol, 18(4), pp.184~192 (2008)
  16. Narumiya S., "The small GTPase Rho : cellular functions and signal transduction", J Biochem, 120(2), pp.215~228 (1996)
  17. Nie Z, "Arf GAPs and membrane traffic", J Cell Sci, 119(7), pp.1203~1211 (2006)
  18. Ototake M, "Notes on Scuticociliata infection of cultured juvenile flounder Paralichtys olivaceus", Bull. Natl. Res. Inst. Aquaculture, 9, pp.65~68 (1986)
  19. Park SI., "Disease control in Korean aquaculture", Fish Pathol, 44(1), pp.19~23 (2009)
  20. Pasqualato S, "Arf, Arl, Arp and Sar proteins : a family of GTPbinding proteins with a structural device for ‘front–back’ communication", EMBO Rep, 3(11), pp.1035~1041 (2002)
  21. Radhakrishna H, "ADP-ribosylation factor 6 regulates a novel plasma membrane recycling pathway", J Cell Biol, 139(1), pp.49~61 (1997)
  22. Salas-Vidal E, "Genomic annotation and expression analysis of the zebrafish Rho small GTPase family during development and bacterial infection", Genomics, 86(1), pp.25~37 (2005)
  23. Scheele JS, "Signaling by small GTPases in the immune system", Immunol Rev, 218(1), pp.92~101 (2007)
  24. Sokal RR, "The principles and practice of statistics in biological research", pp.399~400 (1969), WH Freeman and company
  25. Tamura K, "MEGA6: molecular evolutionary genetics analysis version 6.0", Mol Biol Evol, 30(12), pp.2725~2729 (2013)
  26. Teal SB, "An activating mutation in ARF1 stabilizes coatomer binding to Golgi membranes", J Biol Chem, 269(5), pp.3135~3138 (1994)
  27. Tsuchiya M, "Molecular identification of ADP-ribosylation factor mRNAs and their expression in mammalian cells", J Biol Chem, 266(5), pp.2772~2777 (1991)
  28. Venkatesh B., "Evolution and diversity of fish genomes", Curr Opin Genet Dev, 13(6), pp.588~592 (2003)
  29. Wang W, "Two-stage PCR protocol allowing introduction of multiple mutations, deletions and insertions using QuikChange Site-Directed Mutagenesis", Biotechniques, 26(4), pp.680~682 (1999)
  30. Wu W, "Antiviral phagocytosis is regulated by a novel Rab-dependent complex in shrimp Penaeus japonicus", J Proteome Res, 7(01), pp.424~431 (2007)
  31. Zhang M, "Molecular cloning and characterization of a class II ADP ribosylation factor from the shrimp Marsupenaeus japonicus", Fish Shellfish Immunol, 28(1), pp.128~133 (2010)

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