본문 바로가기
KERD
논문

Complete genome and two plasmids sequences of Lactiplantibacillus plantarum L55 for probiotic potentials

2

조회

0

다운로드

1

인용

0

참고문헌

키워드

주제분류축산학

초록

In this study, we report the complete genome sequence of Lactiplantibacillus plantarum L55, a probiotic strain of lactic acid bacteria isolated from kimchi. The genome consists of one circular chromosome (2,077,416 base pair [bp]) with a guanine cytosine (GC) content of 44.5%, and two circular plasmid sequences (54,267 and 19,592 bp, respectively). We also conducted a comprehensive analysis of the genome, which identified the presence of functional genes, genomic islands, and antibiotic-resistance genes. The genome sequence data presented in this study provide insights into the genetic basis of L. plantarum L55, which could be beneficial for the future development of probiotic applications.

Abstract

In this study, we report the complete genome sequence of Lactiplantibacillus plantarum L55, a probiotic strain of lactic acid bacteria isolated from kimchi. The genome consists of one circular chromosome (2,077,416 base pair [bp]) with a guanine cytosine (GC) content of 44.5%, and two circular plasmid sequences (54,267 and 19,592 bp, respectively). We also conducted a comprehensive analysis of the genome, which identified the presence of functional genes, genomic islands, and antibiotic-resistance genes. The genome sequence data presented in this study provide insights into the genetic basis of L. plantarum L55, which could be beneficial for the future development of probiotic applications.

참고문헌 (9)

  1. Kleerebezem M, "Complete genome sequence of Lactobacillus plantarum WCFS1", Proc Natl Acad Sci, 100, pp.1990~1995 (2003)[DOI]
  2. Echegaray N, "M A novel approach to Lactiplantibacillus plantarum : from probiotic properties to the omics insights", Microbiol Res, pp.127289~ (2022)[DOI]
  3. Kolmogorov M, "Assembly of long, error-prone reads using repeat graphs", Nat Biotechnol, 37, pp.540~546 (2019)[DOI]
  4. "FelixKrueger/TrimGalore:v0.6.7-DOI via Zenodo" (2021)[URL]
  5. Walker BJ, "Pilon : an integrated tool for comprehensive microbial variant detection and genome assembly improvement", PLOS ONE, 9, pp.e112963~ (2014)[DOI]
  6. Seemann T, "Prokka : rapid prokaryotic genome annotation", Bioinformatics, 30, pp.2068~2069 (2014)[DOI]
  7. Manni M, "BUSCO update : novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes", Mol Biol Evol, 38, pp.4647~4654 (2021)[DOI]
  8. Cantalapiedra CP, "eggNOG-mapper v2 : functional annotation, orthology assignments, and domain prediction at the metagenomic scale", Mol Biol Evol, 38, pp.5825~5829 (2021)[DOI]
  9. Huerta-Cepas J, "eggNOG 5. 0 : a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses", Nucleic Acids Res, 47, pp.D309~D314 (2019)[DOI]

관련 논문AI추천

Complete genome sequence of Lactiplantibacillus plantarum ST, a potential probiotic strain with antibacterial propertiesChenglin Deng, Qiong Wu, Qiuye Lin, Shujuan Yang, Weicheng Li, Yao Li, Zhenhui Cao, Zhihong Sun한국축산학회 · 한국축산학회지2022 · 제64권 제1호Comparative Genomic Analysis of Lactobacillus plantarum GB-LP1 Isolated from Traditional Korean Fermented Food강대경, 강정선, 김권도, 김희발, 안소진, 유지현, 윤숙희, 이찬호, 조경진, Kelsey Caetano-Anolles한국미생물·생명공학회 · Journal of Microbiology and Biotechnology2017 · 제27권 제8호Complete genome sequences of Lactococcus lactis JNU 534, a potential food and feed preservative류상돈, Dae-Yeon Cho, Kiyeop Kim, Sejong OH, Young Hoon Kim한국축산학회 · 한국축산학회지2022 · 제64권 제3호Complete Genome Sequence of Lacticaseibacillus rhamnosus YGRT94Jung Da-Ryung, Kim Ikwhan, Kim Ryeong-Hui, Kwon Muhyeok, Lee Dokyung, Lee YeonKyeong, Shin Jae-Ho한국미생물·생명공학회 · 한국미생물·생명공학회지2025 · 제53권 제1호The Complete Genome Sequence of Lacticaseibacillus rhamnosus YGRT11, a Potential Probiotic Strain Isolated from Korean YogurtKim Ryeong-Hui, Lee Dokyung, Lee YeonKyeong, Park Sihyun, Shin Jae-Ho한국미생물·생명공학회 · 한국미생물·생명공학회지2025 · 제53권 제2호Complete Genome Sequence of Lactiplantibacillus plantarum DH24, Isolated from Human Breast MilkHwang Dahyun, Jung Jaemee한국미생물·생명공학회 · 한국미생물·생명공학회지2025 · 제53권 제1호

이 간행물의 다른 논문 (15건)