시스템생물학을 위한 바이오정보학 연구동향

키워드

참고문헌 (64)

1. Shendure, J, "Advanced sequencing technologies: methods and goals", Nat Rev Genet, 5(5), pp.335~344 (2004)
2. Bentley, D.R, "Accurate whole human genome sequencing using reversible terminator chemistry", Nature, 456(7218), pp.53~59 (2008)
3. Wang, J, "The diploid genome sequence of an Asian individual", Nature, 456(7218), pp.6~65 (2008)
4. Needleman, S.B, "A general method applicable to the search for similarities in the amino acid sequence of two proteins", J Mol Biol, 48(3), pp.443~453 (1970)
5. Smith, T.F, "Identification of common molecular subsequences", J Mol Biol, 147(1), pp.195~197 (1981)
6. "FASTA"[URL]
7. "BLAST"[URL]
8. Wang, Z, "A brief review of computational gene prediction methods", Genomics Proteomics Bioinformatics, 2(4), pp.216~221 (2004)
9. Burge, C.B, "Finding the genes in genomic DNA", Curr Opin Struct Biol, 8(3), pp.346~354 (1998)
10. Whelan, S, "Molecular phylogenetics: state‐of‐the‐art methods for looking into the past", Trends Genet, 17(5), pp.262~272 (2001)
11. Das,M.K, "A survey of DNA motif finding algorithms", BMC Bioinformatics, 8(7), pp.S21~ (2007)
12. Golub, T.R, "Molecular classification of cancer: class discovery and class prediction by gene expression monitoring", Science, 286(5439), pp.531~537 (1999)
13. "SAM"[URL]
14. Eisen, M.B, "Cluster analysis and display of genome‐wide expression patterns", Proc Natl Acad Sci U S A, 95(25), pp.14863~14868 (1998)
15. "TM4"[URL]
16. Subramanian, A, "Gene set enrichment analysis: a knowledge‐based approach for interpreting genomewide expression profiles", Proc Natl Acad Sci U S A, 102(43), pp.15545~15550 (2005)
17. Draghici, S, "A systems biology approach for pathway level analysis", Genome Res, 17(10), pp.1537~1545 (2007)
18. "GEO"[URL]
19. "ArrayExpress"[URL]
20. "ExpO"[URL]
21. "Oncomine"[URL]
23. Ito, T, "A comprehensive two‐hybrid analysis to explore the yeast protein interactome", Proceedings of the National Academy of Sciences of the United States of America, 98(8), pp.4569~4574 (2001)
24. Joung, J.K, "A bacterial twohybrid selection system for studying proteinΓÇôDNA and proteinΓÇôprotein interactions", Proceedings of the National Academy of Sciences of the United States of America, 97(13), pp.7382~7387 (2000)
25. von Mering, C, "Comparative assessment of largescale data sets of protein‐protein interactions", Nature, 417(6887), pp.399~403 (2002)
26. Phizicky, E.M, "Protein‐protein interactions: methods for detection and analysis", Microbiol. Rev, 59(1), pp.94~123 (1995)
27. Gavin,A.‐C., "Functional organization of the yeast proteome by systematic analysis of protein complexes", Nature, 415(6868), pp.141~147 (2002)
28. Mann, M, "ANALYSIS OF PROTEINS AND PROTEOMES BY MASS SPECTROMETRY", Annual Review of Biochemistry, 70(1), pp.437~473 (2001)
29. Rigaut, G, "A generic protein purification method for protein complex characterization and proteome exploration", Nat Biotech, 17(10), pp.1030~1032 (1999)
30. Gavin, A.C, "Osprey Functional organization of the yeast proteome by systematic analysis of protein complexes", Nature, 415, pp.141~147 (2002)
31. Jeong, H, "Lethality and centrality in protein networks", Nature, 411(6833), pp.41~42 (2001)
32. Shannon, P, "Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks", Genome Research, 13(11), pp.2498~2504 (2003)
33. Breitkreutz, B.‐J, "Osprey: a network visualization system", Genome Biology, 4(3), pp.R22~ (2003)
34. Chuang, H.‐Y, "Network‐based classification of breast cancer metastasis", Mol Syst Biol, 3 (2007)
35. Hu, P, "Computational prediction of cancer‐gene function", Nat Rev Cancer, 7(1), pp.23~34 (2007)
36. Alfarano, C, "The Biomolecular Interaction Network Database and related tools 2005 update", Nucl. Acids Res, 33(1), pp.D418~424 (2005)
37. Hermjakob, H, "IntAct: an open source molecular interaction database", Nucl. Acids Res, 32(1), pp.D452~455 (2004)
38. Peri, S, ".,Development ofHuman Protein Reference Database as an Initial Platform for Approaching Systems Biology in Humans", Genome Research, 13(10), pp.2363~2371 (2003)
39. Xenarios, I, "DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions", Nucl. Acids Res, 30(1), pp.303~305 (2002)
40. Brown, K.R, "Online Predicted Human Interaction Database", Bioinformatics, 21(9), pp.2076~2082 (2005)
41. Chatr‐aryamontri, A, "MINT: the Molecular INTeraction database", Nucl. Acids Res, 35(1), pp.D572~574 (2007)
42. Jonsson, P.F, "Global topological features of cancer proteins in the human interactome", Bioinformatics, 22(18), pp.2291~2297 (2006)
43. Sherry, S.T., "dbSNP: theNCBI database of genetic variation", Nucleic Acids Res, 28(1), pp.308~311 (2001)
44. Doria, A, "The emerging genetic architecture of type 2 diabetes", Cell Metab, 8(3), pp.186~200 (2008)
45. Reumers, J., "SNPeffect: a database mapping molecular phenotypic effects of human non‐synonymous coding SNPs", Nucleic Acids Res, 33, pp.D527~532 (2005)
46. "OMIM"[URL]
47. Stenson, P.D, "Human Gene Mutation Database(HGMD): 2003 update", HumMutat, 21(6), pp.577~581 (2003)
48. Hirakawa,M, "JSNP: a database of common gene variations in the Japanese population", Nucleic Acids Res, 30(1), pp.158~162 (2002)
49. Fredman, D, "HGVbase: a curated resource describing human DNA variation and phenotype relationships", Nucleic Acids Res, 32, pp.D516~519 (2004)
50. Nadeau, J.H, "Genetics: copies count", Nature, 439(7078), pp.798~799 (2006)
51. "DGV"[URL]
52. Redon, R, "Global variation in copy number in the human genome", Nature, 444(7118), pp.444~454 (2006)
53. Lupski, J.R, "Genomic rearrangements and sporadic disease", Nat Genet, 39(7), pp.S43~47 (2007)
54. "DECIPHER"[URL]
55. "Neuroscience Database Gateway"[URL]
56. "BrainMaps.org"[URL]
57. Introduction: Experimental design and statistical parametric mapping, "Friston, K.J", ~ (2003)
58. Hendriks, B.S., "Quantitative analysis of HER2‐ mediated effects on HER2 and epidermal growth factor receptor endocytosis: distribution of homo‐ and heterodimers depends on relative HER2 levels", J Biol Chem, 278(26), pp.23343~23351 (2003)
59. Edwards, J.S., "In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data", Nat Biotechnol, 19(2), pp.125~130 (2001)
60. Alon, U, "Robustness in bacterial chemotaxis", Nature, 397(6715), pp.168~171 (1999)
61. Chen, K.C, "Kinetic analysis of amolecularmodel of the budding yeast cell cycle", Mol Biol Cell, 11(1), pp.369~391 (2000)
62. Eldar, A, "Robustness of the BMP morphogen gradient in Drosophila embryonic patterning", Nature, 419(6904), pp.304~308 (2002)
63. Kitano, H, "Computational systems biology", Nature, 420(6912), pp.206~210 (2002)
64. Khalil, I.G, "Systems biology for cancer", Curr Opin Oncol, 17(1), pp.44~48 (2005)

관련 논문AI추천