Practical considerations for the study of the oral microbiome

키워드

참고문헌 (50)

1. Floyd E. Dewhirst, "The Human Oral Microbiome", Journal of Bacteriology, 192(19), pp.5002~5017 (2010), American Society for Microbiology[DOI]
2. Jørn A. Aas, "Defining the Normal Bacterial Flora of the Oral Cavity", Journal of Clinical Microbiology, 43(11), pp.5721~5732 (2005), American Society for Microbiology[DOI]
3. Nicola Segata, "Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples", Genome Biology, 13(6), pp.R42~ (2012), Springer Science and Business Media LLC[DOI]
4. Ana Paula V. Colombo, "Comparisons of Subgingival Microbial Profiles of Refractory Periodontitis, Severe Periodontitis, and Periodontal Health Using the Human Oral Microbe Identification Microarray", Journal of Periodontology, 80(9), pp.1421~1432 (2009), Wiley[DOI]
5. Pedro Belda-Ferre, "The oral metagenome in health and disease", The ISME Journal, 6(1), pp.46~56 (2012), Springer Science and Business Media LLC[DOI]
6. Loesche WJ, "Role of Streptococcus mutans in human dental decay", Microbiol Rev, 50, pp.353~380 (1986)
7. Patricia M. Corby, "Heritability of Oral Microbial Species in Caries-Active and Caries-Free Twins", Twin Research and Human Genetics, 10(6), pp.821~828 (2007), Cambridge University Press (CUP)[DOI]
8. Lino Torlakovic, "Changes in the supragingival microbiota surrounding brackets of upper central incisors during orthodontic treatment", Acta Odontologica Scandinavica, 71(6), pp.1547~1554 (2013), Informa UK Limited[DOI]
9. R.T. Demmer, "Periodontal bacteria and prediabetes prevalence in ORIGINS: the oral infections, glucose intolerance, and insulin resistance study", Journal of Dental Research, 94(9_suppl), pp.201S~211S (2015), SAGE Publications[DOI]
10. Ozmeric N, "The association between inflammatory bowel disease and periodontal conditions: is there a common bacterial etiology?", J Int Acad Periodontol, 20, pp.40~51 (2018)
11. Milla Pietiäinen, "Mediators between oral dysbiosis and cardiovascular diseases", European Journal of Oral Sciences, 126(S1), pp.26~36 (2018), Wiley[DOI]
12. Charles Cobb, "The oral microbiome and adverse pregnancy outcomes", International Journal of Women's Health, 9, pp.551~559 (2017), Informa UK Limited[DOI]
13. Woese CR, "Bacterial evolution", Microbiol Rev, 51, pp.221~271 (1987)
14. Hyun Jung Kim, "Contributions of microbiome and mechanical deformation to intestinal bacterial overgrowth and inflammation in a human gut-on-a-chip", Proceedings of the National Academy of Sciences, 113(1), pp.E7~E15 (2016), Proceedings of the National Academy of Sciences[DOI]
15. Sophie Candon, "Antibiotics in Early Life Alter the Gut Microbiome and Increase Disease Incidence in a Spontaneous Mouse Model of Autoimmune Insulin-Dependent Diabetes", PLOS ONE, 10(5), pp.e0125448~ (2015), Public Library of Science (PLoS)[DOI]
16. ZHIGUANG GAO, "Probiotics modify human intestinal mucosa-associated microbiota in patients with colorectal cancer", Molecular Medicine Reports, 12(4), pp.6119~6127 (2015), Spandidos Publications[DOI]
17. Marc Jan Bonder, "The influence of a short-term gluten-free diet on the human gut microbiome", Genome Medicine, 8(1), pp.45~ (2016), Springer Science and Business Media LLC[DOI]
18. J. Rajendhran, "Microbial phylogeny and diversity: Small subunit ribosomal RNA sequence analysis and beyond", Microbiological Research, 166(2), pp.99~110 (2011), Elsevier BV[DOI]
19. F. Sanger, "DNA sequencing with chain-terminating inhibitors", Proceedings of the National Academy of Sciences, 74(12), pp.5463~5467 (1977), Proceedings of the National Academy of Sciences[DOI]
20. Bruce J. Paster, "Bacterial Diversity in Human Subgingival Plaque", Journal of Bacteriology, 183(12), pp.3770~3783 (2001), American Society for Microbiology[DOI]
21. Bo Yang, "Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis", BMC Bioinformatics, 17(1), pp.135~ (2016), Springer Science and Business Media LLC[DOI]
22. Minseok Kim, "Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes", Journal of Microbiological Methods, 84(1), pp.81~87 (2011), Elsevier BV[DOI]
23. Alan W. Walker, "16S rRNA gene-based profiling of the human infant gut microbiota is strongly influenced by sample processing and PCR primer choice", Microbiome, 3(1), pp.26~ (2015), Springer Science and Business Media LLC[DOI]
24. Jacquelyn S. Meisel, "Skin Microbiome Surveys Are Strongly Influenced by Experimental Design", Journal of Investigative Dermatology, 136(5), pp.947~956 (2016), Elsevier BV[DOI]
25. Gwen Falony, "Population-level analysis of gut microbiome variation", Science, 352(6285), pp.560~564 (2016), American Association for the Advancement of Science (AAAS)[DOI]
26. G. D. Wu, "Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes", Science, 334(6052), pp.105~108 (2011), American Association for the Advancement of Science (AAAS)[DOI]
27. Matthew A Jackson, "Proton pump inhibitors alter the composition of the gut microbiota", Gut, 65(5), pp.749~756 (2016), BMJ[DOI]
28. Kelly BJ, "Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA", Bioinformatics, 31, pp.2461~2468 (2015)[DOI]
29. Justine Debelius, "Tiny microbes, enormous impacts: what matters in gut microbiome studies?", Genome Biology, 17(1), pp.217~ (2016), Springer Science and Business Media LLC[DOI]
30. Patricio S. La Rosa, "Hypothesis Testing and Power Calculations for Taxonomic-Based Human Microbiome Data", PLoS ONE, 7(12), pp.e52078~ (2012), Public Library of Science (PLoS)[DOI]
31. L. Dethlefsen, "Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation", Proceedings of the National Academy of Sciences, 108(Supplement_1), pp.4554~4561 (2011), Proceedings of the National Academy of Sciences[DOI]
32. Rashmi Sinha, "Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium", Nature Biotechnology, 35(11), pp.1077~1086 (2017), Springer Science and Business Media LLC[DOI]
33. Se Jin Song, "Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies", mSystems, 1(3), pp.e00021-16~ (2016), American Society for Microbiology[DOI]
34. Jacques Ravel, "Evaluation of 16S rDNA-Based Community Profiling for Human Microbiome Research", PLoS ONE, 7(6), pp.e39315~ (2012), Public Library of Science (PLoS)[DOI]
35. Marcel Margulies, "Genome sequencing in microfabricated high-density picolitre reactors", Nature, 437(7057), pp.376~380 (2005), Springer Science and Business Media LLC[DOI]
36. David R. Bentley, "Accurate whole human genome sequencing using reversible terminator chemistry", Nature, 456(7218), pp.53~59 (2008), Springer Science and Business Media LLC[DOI]
37. Yiping Wei, "Comparison of Subgingival and Buccal Mucosa Microbiome in Chronic and Aggressive Periodontitis: A Pilot Study", Frontiers in Cellular and Infection Microbiology, 9, pp.53~ (2019), Frontiers Media SA[DOI]
38. J. Korlach, "Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures", Proceedings of the National Academy of Sciences, 105(4), pp.1176~1181 (2008), Proceedings of the National Academy of Sciences[DOI]
39. Jonathan M. Rothberg, "An integrated semiconductor device enabling non-optical genome sequencing", Nature, 475(7356), pp.348~352 (2011), Springer Science and Business Media LLC[DOI]
40. Jens Reeder, "The 'rare biosphere': a reality check", Nature Methods, 6(9), pp.636~637 (2009), Springer Science and Business Media LLC[DOI]
41. Benjamin J Callahan, "Exact sequence variants should replace operational taxonomic units in marker-gene data analysis", The ISME Journal, 11(12), pp.2639~2643 (2017), Springer Science and Business Media LLC[DOI]
42. A Murat Eren, "Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences", The ISME Journal, 9(4), pp.968~979 (2015), Springer Science and Business Media LLC[DOI]
43. Amnon Amir, "Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns", mSystems, 2(2), pp.e00191-16~ (2017), American Society for Microbiology[DOI]
44. Benjamin J Callahan, "DADA2: High-resolution sample inference from Illumina amplicon data", Nature Methods, 13(7), pp.581~583 (2016), Springer Science and Business Media LLC[DOI]
45. Qiong Wang, "Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy", Applied and Environmental Microbiology, 73(16), pp.5261~5267 (2007), American Society for Microbiology[DOI]
46. Almeida A, "Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments", Gigascience, 7, pp.giy054~ (2018)[DOI]
47. Justin Kuczynski, "Microbial community resemblance methods differ in their ability to detect biologically relevant patterns", Nature Methods, 7(10), pp.813~819 (2010), Springer Science and Business Media LLC[DOI]
48. Marti J. Anderson, "PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?", Ecological Monographs, 83(4), pp.557~574 (2013), Wiley[DOI]
49. Shi Huang, "Predictive modeling of gingivitis severity and susceptibility via oral microbiota", The ISME Journal, 8(9), pp.1768~1780 (2014), Springer Science and Business Media LLC[DOI]
50. Dongmei Ai, "Integrated metagenomic data analysis demonstrates that a loss of diversity in oral microbiota is associated with periodontitis", BMC Genomics, 18(S1), pp.1041~ (2017), Springer Science and Business Media LLC[DOI]

관련 논문AI추천