State of the art on the physical mapping of the Y-chromosome in the Bovidae and comparison with other species — A review

키워드

참고문헌 (100)

1. Warr A, "An improved pig reference genome sequence to enable pig genetics and genomics research", GigaScience, 9, pp.giaa051~ (2020)[DOI]
2. Benjamin D Rosen, "De novo assembly of the cattle reference genome with single-molecule sequencing", GigaScience, 9(3), pp.giaa021~ (2020), Oxford University Press (OUP)[DOI]
3. Low WY, "Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity", Nat Commun, 10, pp.260~ (2019)[DOI]
4. Archibald AL, "The sheep genome reference sequence : a work in progress", Anim Genet, 41, pp.449~453 (2010)[DOI]
5. Bickhart DM, "Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome", Nat Genet, 49, pp.643~650 (2017)[DOI]
6. Chowdhary BP, "Vertebrate Genomes Vol 2", pp.97~110 (2006), Karger
7. Fitak RR, "The de novo genome assembly and annotation of a female domestic dromedary of North African origin", Mol Ecol Resour, 16, pp.314~324 (2016)[DOI]
8. Bianchi NO, "Karyological conservatism in South American camelids", Experientia, 42, pp.622~624 (1986)[DOI]
9. Di Berardino D, "Cytogenetic characterization of alpaca(Lama pacos, fam. Camelidae) prometaphase chromosomes", Cytogenet Genome Res, 115, pp.138~144 (2006)[DOI]
10. Frantz LAF, "Animal domestication in the era of ancient genomics", Nat Rev Genet, 21, pp.449~460 (2020)[DOI]
11. Fonseca PAS, "GALLO : An R package for genomic annotation and integration of multiple data sources in livestock for positional candidate loci", Gigascience, 9, pp.giaa149~ (2020)[DOI]
12. Eusebi PG, "Genomic tools for effective conservation of livestock breed diversity", Diversity, 12, pp.8~ (2020)[DOI]
13. Bai Y, "Current status and future perspectives for sequencing livestock genomes", J Anim Sci Biotechnol, 3, pp.8~ (2012)[DOI]
14. Sánchez-Molano E, "Genetic analysis of novel phenotypes for farm animal resilience to weather variability", BMC Genet, 20, pp.84~ (2019)[DOI]
15. Liu R, "New insights into mammalian sex chromosome structure and evolution using highquality sequences from bovine X and Y chromosomes", BMC Genomics, 20, pp.1000~ (2019)[DOI]
16. Dhanoa JK, "Y-chromosomal genes affecting male fertility : a review", Vet World, 9, pp.783~791 (2016)[DOI]
17. Raudsepp T, "The eutherian pseudoautosomal region", Cytogenet Genome Res, 147, pp.81~94 (2015)[DOI]
18. Skaletsky H, "The malespecific region of the human Y chromosome is a mosaic of discrete sequence classes", Nature, 423, pp.825~837 (2003)[DOI]
19. Rozen S, "Abundant gene conversion between arms of palindromes in human and ape Y chromosomes", Nature, 423, pp.873~876 (2003)[DOI]
20. Trombetta B, "Patterns of interchromosomal gene conversion on the male-specific region of the human Y Chromosome", Front Genet, 8, pp.54~ (2017)[DOI]
21. Hughes JF, "Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes", Nature, 483, pp.82~86 (2012)[DOI]
22. Soh YQ, "Sequencing the mouse Y chromosome reveals convergent gene acquisition and amplification on both sex chromosomes", Cell, 159, pp.800~813 (2014)[DOI]
23. Skinner BM, "The pig X and Y-chromosomes : structure, sequence, and evolution", Genome Res, 26, pp.130~139 (2016)[DOI]
24. Janečka JE, "Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes", Nat Commun, 9, pp.2945~ (2018)[DOI]
25. De Lorenzi L, "Identification of some errors in the genome assembly of bovidae by FISH", Cytogenet Genome Res, 160, pp.85~93 (2020)[DOI]
26. R. E. O'Connor, "Isolation of subtelomeric sequences of porcine chromosomes for translocation screening reveals errors in the pig genome assembly", Animal Genetics, 48(4), pp.395~403 (2017), Wiley[DOI]
27. O'Connor C, "Fluorescence in situ hybridization(FISH)", Nature Education, 1, pp.171~ (2008)
28. Bubendorf L, "Comprehensive cytopathology", pp.1071~1090 (2008), W.B. Saunders
29. Deakin JE, "Chromosomics: bridging the gap between genomes and chromosomes", Genes(Basel), 10, pp.627~ (2019)[DOI]
30. O'Connor SJM, "In situ hybridization protocols. Methods in molecular biology vol 2148", pp.35~70 (2020), Humana
31. Levsky JM, "Fluorescence in situ hybridization : past, present and future", J Cell Sci, 116(Pt 14), pp.2833~2838 (2003)[DOI]
32. Rubes J, "Comparative molecular cytogenetics in cetartiodactyla", Cytogenet Genome Res, 137, pp.194~207 (2012)[DOI]
33. Graphodatsky AS, "The genome diversity and karyotype evolution of mammals", Mol Cytogenet, 4, pp.22~ (2011)[DOI]
34. Toder R, "Genes located in and near the human pseudoautosomal region are located in the X-Y pairing region in dog and sheep", Chromosome Res, 5, pp.301~306 (1997)[DOI]
35. Yeh CC, "Genetic and physical mapping of the bovine X chromosome", Genomics, 32, pp.245~252 (1996)[DOI]
36. lannuzzi L, "Standard karyotype of the river buffalo (Bubalus bubalis L., 2n = 50). Report of the committee for the standardization of banded karyotypes of the river buffalo", Cytogenet Cell Genet, 67, pp.102~113 (1994)[DOI]
37. Cribiu EP, "International system for chromosome nomenclature of domestic bovids (ISCNDB 2000)", Cytogenet Cell Genet, 92, pp.283~299 (2001)[DOI]
38. Gallagher DS, "Chromosome conservation in the bovidae", J Hered, 83, pp.287~298 (1992)[DOI]
39. Das PJ, "Characterization of the bovine pseudoautosomal region and comparison with sheep, goat, and other mammalian pseudoautosomal regions", Cytogenet Genome Res, 126, pp.139~147 (2009)[DOI]
40. Perret J, "A polymorphic satellite sequence maps to the pericentric region of the bovine Y chromosome", Genomics, 6, pp.482~490 (1990)[DOI]
41. Thomsen PD, "Distribution of two conserved, male-enriched repeat families on the Bos taurus Y chromosome", Mamm Genome, 5, pp.171~173 (1994)[DOI]
42. Vogel T, "Conserved Y-chromosomal location of TSPY in Bovidae", Chromosome Res, 5, pp.182~185 (1997)[DOI]
43. Goldammer T, "Comparative analysis of Y chromosome structure in Bos taurus and B. indicus by FISH using region-specific, microdissected, and locus-specific DNA probes", Cytogenet Cell Genet, 77, pp.238~241 (1997)[DOI]
44. Weikard R, "Sex determination in cattle based on simultaneous amplification of a new malespecific DNA sequence and an autosomal locus using the same primers", Mol Reprod Dev, 60, pp.13~19 (2001)[DOI]
45. Di Meo GP, "Chromosome evolution and improved cytogenetic maps of the Y chromosome in cattle, zebu, river buffalo, sheep and goat", Chromosome Res, 13, pp.349~355 (2005)[DOI]
46. Habermann F, "Validation of sperm sexing in the cattle (Bos taurus) by dual colour fluorescence in situ hybridization", J Anim Breed Genet, 122(Suppl 1), pp.22~27 (2005)[DOI]
47. Hamilton CK, "Copy number variation of testis-specific protein, Y-encoded(TSPY)in 14different breeds of cattle(Bos taurus)", Sex Dev, 3, pp.205~213 (2009)[DOI]
48. Hamilton CK, "A large expansion of the HSFY gene family in cattle shows dispersion across Yq and testis-specific expression", PLoS One, 6, pp.e17790~ (2011)[DOI]
49. Prakash B, "FISH mapping of three bovine cosmids to cattle, goat, sheep and buffalo X chromosomes", Hereditas, 126, pp.115~119 (1997)[DOI]
50. Piumi F, "Comparative cytogenetic mapping reveals chromosome rearrangements between the X chromosomes of two closely related mammalian species(cattle and goats)", Cytogenet Cell Genet, 81, pp.36~41 (1998)[DOI]
51. Iannuzzi L, "Comparative FISH mapping of bovid X chromosomes reveals homologies and divergences between the subfamilies bovinae and caprinae", Cytogenet Cell Genet, 89, pp.171~176 (2000)[DOI]
52. Perucatti A, "Advanced comparative cytogenetic analysis of X chromosomes in river buffalo, cattle, sheep, and human", Chromosome Res, 20, pp.413~425 (2012)[DOI]
53. De Lorenzi L, "Physical mapping of 20 unmapped fragments of the btau_4. 0 genome assembly in cattle, sheep and river buffalo", Cytogenet Genome Res, 140, pp.29~35 (2013)[DOI]
54. Quilter CR, "A mapping and evolutionary study of porcine sex chromosome genes", Mamm Genome, 13, pp.588~594 (2002)[DOI]
55. Das PJ, "Comparative organization and gene expression profiles of the porcine pseudoautosomal region", Cytogenet Genome Res, 141, pp.26~36 (2013)[DOI]
56. Skinner BM, "Regions of XY homology in the pig X chromosome and the boundary of the pseudoautosomal region", BMC Genet, 14, pp.3~ (2013)[DOI]
57. Cornefert-Jensen F, "Identification of the sex chromosomes of the domestic pig", J Hered, 59, pp.251~255 (1968)[DOI]
58. Grunwald D, "Swine chromosomes : flow sorting and spot blot hybridization", Cytometry, 7, pp.582~588 (1986)[DOI]
59. Chowdhary BP, "Potential applications of equine genomics in dissecting diseases and fertility", Anim Reprod Sci, 107, pp.208~218 (2008)[DOI]
60. Raudsepp T, "A detailed physical map of the horse Y chromosome", Proc Natl Acad Sci USA, 101, pp.9321~9326 (2004)[DOI]
61. Paria N, "Discovery of candidate genes for stallion fertility from the horse Y chromosome", Doctor, pp.2009
62. Paria N, "A gene catalogue of the euchromatic male-specific region of the horse Y chromosome : comparison with human and other mammals", PLoS One, 6, pp.e21374~ (2011)[DOI]
63. Raudsepp T, "The horse pseudoautosomal region (PAR):characterization and comparison with the human, chimp and mouse PARs", Cytogenet Genome Res, 121, pp.102~109 (2008)[DOI]
64. Raudsepp T, "The pseudoautosomal region and sex chromosome aneuploidies in domestic species", Sex Dev, 6, pp.72~83 (2012)[DOI]
65. Raudsepp T, "A 4, 103marker integrated physical and comparative map of the horse genome", Cytogenet Genome Res, 122, pp.28~36 (2008)[DOI]
66. Chowdhary BP, "The horse genome derby : racing from map to whole genome sequence", Chromosome Res, 16, pp.109~127 (2008)[DOI]
67. Salvá B, "Nutrient composition and technological quality of meat from alpacas reared in Peru", Meat Sci, 82, pp.450~455 (2009)[DOI]
68. Popova T, "Meat of South American camelids-Sensory quality and nutritional composition", Meat Sci, 171, pp.108285~ (2021)[DOI]
69. Pauciullo A, "Casein gene cluster in camelids : comparative genome analysis and new findings on haplotype variability and physical mapping", Front Genet, 10, pp.748~ (2019)[DOI]
70. Morante R, "Genetic improvement for alpaca fibre production in the Peruvian Altiplano : the Pacomarca experience", Anim Genet Res Inf, 45, pp.37~43 (2009)[DOI]
71. Cruz A, "Genetic parameters for medullated fiber and its relationship with other productive traits in alpacas", Animal, 13, pp.1358~1364 (2019)[DOI]
72. Mendoza MN, "Cytogenetic mapping of 35 new markers in the alpaca(Vicugna pacos)", Genes(Basel), 11, pp.522~ (2020)[DOI]
73. Richardson MF, "Chromosome-Level alpaca reference genome VicPac3.1 Improves genomic insight into the biology of new world camelids", Front Genet, 10, pp.586~ (2019)[DOI]
74. Avila F, "A comprehensive wholegenome integrated cytogenetic map for the alpaca (Lama pacos)", Cytogenet Genome Res, 144, pp.193~207 (2014)[DOI]
75. Jevit MJ, "An 8.22 Mb assembly and annotation of the alpaca (Vicugna pacos) Y chromosome", Genes(Basel), 12, pp.105~ (2021)[DOI]
76. Avila F, "Development and application of camelid molecular cytogenetic tools", J Hered, 105, pp.952~963 (2014)[DOI]
77. Yue XP, "Copy number variation of PRAMEY across breeds and its association with male fertility in Holstein sires", J Dairy Sci, 96, pp.8024~8034 (2013)[DOI]
78. Yue XP, "Copy number variations of the extensively amplified Y-linked genes, HSFY and ZNF 280BY, in cattle and their association with male reproductive traits in Holstein bulls", BMC Genomics, 15, pp.113~ (2014)[DOI]
79. Pacheco HA, "Gene mapping and genomic prediction of bull fertility using sex chromosome markers", J Dairy Sci, 103, pp.3304~3311 (2020)[DOI]
80. Vogel T, "Organization and expression of bovine TSPY", Mamm Genome, 8, pp.491~ (1997)[DOI]
81. Wang M, "Efficient TALEN-mediated gene knockin at the bovine Y chromosome and generation of a sex-reversal bovine", Cell Mol Life Sci, 78, pp.5415~5425 (2021)[DOI]
82. Xi J, "Sex control by Zfy siRNA in the dairy cattle", Anim Reprod Sci, 200, pp.1~6 (2019)[DOI]
83. Suriaty R, "Detection of y chromosome of bovine Using testis specific protein and Amelogenin genes", Malaysian J Vet Res, 7, pp.47~51 (2016)
84. Sánchez JM, "MicroRNAs in amniotic fluid and maternal blood plasma associated with sex determination and early gonad differentiation in cattle", Biol Reprod, 105, pp.345~358 (2021)[DOI]
85. Rhoads A, "PacBio sequencing and its applications", Genomics Proteomics Bioinformatics, 13, pp.278~289 (2015)[DOI]
86. Pauciullo A, "Dual-color high-resolution fiber-FISH analysis on lethal white syndrome carriers in sheep", Cytogenet Genome Res, 140, pp.46~54 (2013)[DOI]
87. Ye CJ, "Cancer cytogenetics. Methods in molecular biology v.1541", pp.151~166 (2017), Humana Press
88. Lindgren G, "Genome mapping in the horse", pp.2001
89. Wade CM, "Genome sequence, comparative analysis, and population genetics of the domestic horse", Science, 326, pp.865~867 (2009)[DOI]
90. Tomaszkiewicz M, "Y and W Chromosome assemblies : approaches and discoveries", Trends Genet, 33, pp.266~282 (2017)[DOI]
91. Chen N, "Identification of avian W-linked contigs by short-read sequencing", BMC Genomics, 13, pp.183~ (2012)[DOI]
92. Galtier N, "Recombination, GC-content and the human pseudoautosomal boundary paradox", Trends Genet, 20, pp.347~349 (2004)[DOI]
93. Katsura Y, "Evolution of genomic structures on mammalian sex chromosomes", Curr Genomics, 13, pp.115~123 (2012)[DOI]
94. Kutch IC, "Y-chromosomes can constrain adaptive evolution via epistatic interactions with other chromosomes", BMC Evol Biol, 18, pp.204~ (2018)[DOI]
95. Bellott DW, "Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators", Nature, 508, pp.494~499 (2014)[DOI]
96. Jiang PP, "Y not a dead end: epistatic interactions between Y-linked regulatory polymorphisms and genetic background affect global gene expression in Drosophila melanogaster", Genetics, 186, pp.109~118 (2010)[DOI]
97. Lemos B, "Polymorphic Y chromosomes harbor cryptic variation with manifold functional consequences", Science, 319, pp.91~93 (2008)[DOI]
98. Ohno S, "Sex chromosomes and sex-linked genes" (1967), Springer-Verlag
99. Schenkel MA, "Epistatic interactions between sex chromosomes and autosomes can affect the stability of sex determination systems", J Evol Biol, 34, pp.1666~1677 (2021)[DOI]
100. Yang H, "The sex-determining region Y (SRY) gene is mapped to p12-p13 of the Y chromosome in pig (Sus scrofa domestica) by in situ hybridization", Anim Genet, 24, pp.297~300 (1993)[DOI]

관련 논문AI추천