황금색 넙치(Paralichthys olivaceus)의 발현을 예측할 수 있는 Microsatellite Marker 개발
Identification of Genetic Markers Distinguishing Golden Flounders from Normal Olive Flounders Paralichthys olivaceus Using Microsatellite Markers
1
조회
0
다운로드
0
인용
0
참고문헌
키워드
초록
Despite its economic importance, olive flounder Paralichthys olivaceus aquaculture industry is facing a crisis with a continuous production decline. There have been many solutions to overcome the complicate predicament proposed. Increasing genetic diversity and discovering new commercial value through selective breeding are among them. The aims of the present study are to increase the selection power of the golden flounders. We examined the genetic diversity of the breeder population of golden flounders and developed selective markers for the golden flounder population. The 6 microsatellite (MS) markers were selected from melanogenesis-related genes, which are believed to be involved in the pigmentation of fish. All markers were polymorphic (except PO4) and 5 of them had PIC value of 0.6 or above. All makers had distinctive alleles indicating either normal or golden individuals. For examples, from PO4 marker, the frequency of an allele (316) in the golden population was 100% and in normal population was 0% (P<0.001). Although some more studies with more samples at the later generations should be performed to confirm this result, the 316 allele from PO4 marker could be a distinctive tool for decision of the colors in olive flounders at an early stage of the life cycle.
Abstract
Despite its economic importance, olive flounder Paralichthys olivaceus aquaculture industry is facing a crisis with a continuous production decline. There have been many solutions to overcome the complicate predicament proposed. Increasing genetic diversity and discovering new commercial value through selective breeding are among them. The aims of the present study are to increase the selection power of the golden flounders. We examined the genetic diversity of the breeder population of golden flounders and developed selective markers for the golden flounder population. The 6 microsatellite (MS) markers were selected from melanogenesis-related genes, which are believed to be involved in the pigmentation of fish. All markers were polymorphic (except PO4) and 5 of them had PIC value of 0.6 or above. All makers had distinctive alleles indicating either normal or golden individuals. For examples, from PO4 marker, the frequency of an allele (316) in the golden population was 100% and in normal population was 0% (P<0.001). Although some more studies with more samples at the later generations should be performed to confirm this result, the 316 allele from PO4 marker could be a distinctive tool for decision of the colors in olive flounders at an early stage of the life cycle.
참고문헌 (40)
- Rodrigo Almeida-Paes, "Melanin biosynthesis in pathogenic species of Sporothrix", Fungal Biology Reviews, 31(1), pp.50~59 (2017), Elsevier BV[DOI]
- C. M. Altimus, "Rods-cones and melanopsin detect light and dark to modulate sleep independent of image formation", Proceedings of the National Academy of Sciences, 105(50), pp.19998~20003 (2008), Proceedings of the National Academy of Sciences[DOI]
- Justin Bohling, "Genetic diversity and population structure of domestic brown trout (Salmo trutta) in France", Aquaculture, 462, pp.1~9 (2016), Elsevier BV[DOI]
- Laura Cal, "Fish pigmentation and the melanocortin system", Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 211, pp.26~33 (2017), Elsevier BV[DOI]
- Chen SK, "Photoentrainment and pupillary light reflex are mediated by distinct populations of ipRGCs", Nature, 476, pp.92~95 (2011)
- Kevin Curran, "Interplay between Foxd3 and Mitf regulates cell fate plasticity in the zebrafish neural crest", Developmental Biology, 344(1), pp.107~118 (2010), Elsevier BV[DOI]
- David Dudgeon, "Freshwater biodiversity: importance, threats, status and conservation challenges", Biological Reviews, 81(02), pp.163~182 (2006), Wiley[DOI]
- Jorg Hartmann, "Tyrosine Kinase Inhibitors – A Review on Pharmacology, Metabolism and Side Effects", Current Drug Metabolism, 10(5), pp.470~481 (2009), Bentham Science Publishers Ltd.[DOI]
- 황진욱, "넙치양식 선발육종사업의 경제효과", 수산경영론집, 41(1), pp.113~128 (2010), 한국수산경영학회
- 정달상, "종묘방류에 따른 넙치, Paralichthys olivaceus 지역집단의 유전학적 구조", 한국어류학회지, 20(3), pp.156~162 (2008), 한국어류학회
- 정달상, "넙치, Paralichthys olivaceus 자연 집단과 양식 집단의 유전학적 다양성 비교", 한국어류학회지, 21(4), pp.221~226 (2010), 한국어류학회
- Kadlec J, "The xanthoric form of Aphyosemion australe Rachow, 1921", Freshwater Marine Aquarium, 18, pp.72~78 (1995)
- 강덕영, "양식산 넙치, Paralichthys olivaceus의 가성 백색증 (pseudo-albinism) 발현에 미치는 환경인자들의 영향", 한국수산과학회지, 40(4), pp.234~242 (2007), 한국수산과학회
- Kang DC, "Expression analysis and genomic characterization of human melanoma differentiation associated gene-5, mda-5 : a novel type I interferon-responsive apoptosis-inducing gene", Oncogene, 23, pp.1789~1800 (2004)
- Kang DY, "Possible relevance of blind-side skin hypermelanosis in cultured olive flounders Paralichthys olivaceus to chronic stress", J Mar Biol, 1, pp.56~62 (2016)
- P.E. Kinnear, "Albinism", Survey of Ophthalmology, 30(2), pp.75~101 (1985), Elsevier BV[DOI]
- "The current fish culture by city and province, ward and county, by culture type by species" (2019)[URL]
- Kaoru Kuriiwa, "Phylogenetic relationships and natural hybridization in rabbitfishes (Teleostei: Siganidae) inferred from mitochondrial and nuclear DNA analyses", Molecular Phylogenetics and Evolution, 45(1), pp.69~80 (2007), Elsevier BV[DOI]
- R. L. Lamason, "SLC24A5, a Putative Cation Exchanger, Affects Pigmentation in Zebrafish and Humans", Science, 310(5755), pp.1782~1786 (2005), American Association for the Advancement of Science (AAAS)[DOI]
- 이남수, "양식 넙치의 유통 및 소비구조에 관한 연구", 수산경영론집, 37(2), pp.61~83 (2006), 한국수산경영학회
- Jennifer Y. Lin, "Melanocyte biology and skin pigmentation", Nature, 445(7130), pp.843~850 (2007), Springer Science and Business Media LLC[DOI]
- Luo R, "SOAPdenovo2 : an empirically improved memory-efficient shortread de novo assembler", Gigascience, 1, pp.2047~2217 (2012)
- T. C. MARSHALL, "Statistical confidence for likelihood‐based paternity inference in natural populations", Molecular Ecology, 7(5), pp.639~655 (2003), Wiley[DOI]
- James E.N. Minchin, "Sequential actions of Pax3 and Pax7 drive xanthophore development in zebrafish neural crest", Developmental Biology, 317(2), pp.508~522 (2008), Elsevier BV[DOI]
- Nozomu Muto, "First record of albinism in the rockfish Sebastes pachycephalus complex (Scorpaeniformes: Scorpaenidae)", Ichthyological Research, 60(2), pp.195~197 (2013), Springer Science and Business Media LLC[DOI]
- Hanna Nord, "Pax7 is required for establishment of the xanthophore lineage in zebrafish embryos", Molecular Biology of the Cell, 27(11), pp.1853~1862 (2016), American Society for Cell Biology (ASCB)[DOI]
- Odenthal J, "Mutations affecting xanthophore pigmentation in the zebrafish, Danio rerio", Development, 123, pp.391~398 (1996)
- Quigley DTG, "Albinism and leucism in blonde rays(Raja brachyura Lafont, 1871)(Elasmobranchii : Batoidea)from the Irish Sea", Bull European Assoc Fish Patholog, 38, pp.79~ (2018)
- D. T. G. Quigley, "First records of xanthochromism in three-bearded rockling Gaidropsarus vulgaris (Cloquet, 1824) and pollack Pollachius pollachius (Linnaeus, 1758)", Journal of Applied Ichthyology, 33(6), pp.1208~1210 (2017), Wiley[DOI]
- Quigley DTG, "An albino xanthochromic spotted or homelyn ray(Raja montagui Fowler)from Irish waters", Bull European Assoc Fish Patholog, 38, pp.109~ (2018)
- Rogers SL, "Regulated bidirectional motility of melanophore pigment granules along microtubules in vitro", Proc Natl Acad Sci, 8, pp.3720~3725 (1997)
- Ruby NF, "Role of melanopsin in circadian responses to light", Science, 298, pp.2211~2213 (2002)
- Takahito Shikano, "Marker-based estimation of heritability for body color variation in Japanese flounder Paralichthys olivaceus", Aquaculture, 249(1-4), pp.95~105 (2005), Elsevier BV[DOI]
- Andrzej Slominski, "L-tyrosine and L-dihydroxyphenylalanine as hormone-like regulators of melanocyte functions", Pigment Cell & Melanoma Research, 25(1), pp.14~27 (2012), Wiley[DOI]
- 송하윤, "우리나라 미꾸리속 (genus Misgurnus) 알비노 개체의 미토콘드리아 및 핵 유전자 염기서열 분석에 의한 유전적 동정", 한국어류학회지, 29(2), pp.139~145 (2017), 한국어류학회
- Veena S, "Leucism in seerfish Scomberomorus commerson, landed at landed at Chintapalli, Andhra Pradesh", Mar Fish Infor Serv T E Ser, 221, pp.13~13 (2014)
- Veena S, "Case of leucism in the spadenorse shark, Scoliodon laticaudus(Muller and Henle, 1838), from Man galore Karnataka", Indian J Fish, 25, pp.109~112 (2011)
- Jiaqing Wang, "The tyrosinase gene family and albinism in fish", Chinese Journal of Oceanology and Limnology, 25(2), pp.191~198 (2007), Springer Science and Business Media LLC[DOI]
- Zhou Y, "Microsatellite analysis on genetic diversity of wild and cultured populations of Scylla paramamosain", Acta Agriculturae Zhejiangensis, 23, pp.712~716 (2011)[DOI]
- Samaneh Zolghadri, "A comprehensive review on tyrosinase inhibitors", Journal of Enzyme Inhibition and Medicinal Chemistry, 34(1), pp.279~309 (2019), Informa UK Limited[DOI]