Modulation of the Metal(loid) Specificity of Whole-Cell Bioreporters by Genetic Engineering of ZntR Metal-Binding Loops
2
조회
0
다운로드
0
인용
0
참고문헌
키워드
초록
Bacterial cell-based biosensors, or whole-cell bioreporters (WCBs), are an alternative tool for the quantification of hazardous materials. Most WCBs share similar working mechanisms. In brief, the recognition of a target by sensing domains induces a biological event, such as changes in protein conformation or gene expression, providing a basis for quantification. WCBs targeting heavy metal(loid)s employ metalloregulators as sensing domains and control the expression of genes in the presence of target metal(loid) ions, but the diversity of targets, specificity, and sensitivity of these WCBs are limited. In this study, we genetically engineered the metal-binding loop (MBL) of ZntR, which controls the znt-operon in Escherichia coli. In the MBL of ZntR, three Cys sites interact with metal ions. Based on the crystal structure of ZntR, MBL sequences were modified by sitedirected mutagenesis. As a result, the metal-sensing properties of WCBs differed depending on amino acid sequences and the new selectivity to Cr or Pb was observed. Although there is room for improvement, our results support the use of currently available WCBs as a platform to generate new WCBs to target other environmental pollutants including metal(loid)s.
Abstract
Bacterial cell-based biosensors, or whole-cell bioreporters (WCBs), are an alternative tool for the quantification of hazardous materials. Most WCBs share similar working mechanisms. In brief, the recognition of a target by sensing domains induces a biological event, such as changes in protein conformation or gene expression, providing a basis for quantification. WCBs targeting heavy metal(loid)s employ metalloregulators as sensing domains and control the expression of genes in the presence of target metal(loid) ions, but the diversity of targets, specificity, and sensitivity of these WCBs are limited. In this study, we genetically engineered the metal-binding loop (MBL) of ZntR, which controls the znt-operon in Escherichia coli. In the MBL of ZntR, three Cys sites interact with metal ions. Based on the crystal structure of ZntR, MBL sequences were modified by sitedirected mutagenesis. As a result, the metal-sensing properties of WCBs differed depending on amino acid sequences and the new selectivity to Cr or Pb was observed. Although there is room for improvement, our results support the use of currently available WCBs as a platform to generate new WCBs to target other environmental pollutants including metal(loid)s.
참고문헌 (28)
- Bereza-Malcolm LT, "Environmental sensing of heavy metals through whole cell microbial biosensors : a synthetic biology approach", ACS Synthetic Biol, 4, pp.535~546 (2014)
- Fernandez-López R, "Transcription factor-based biosensors enlightened by the analyte", Front. Microbiol, 6, pp.648~ (2015)
- Mahr R, "Transcription factor-based biosensors in biotechnology : current state and future prospects", Appl. Microbiol. Bbiotechnol, 100, pp.79~90 (2016)
- Robbens J, "Escherichia coli as a bioreporter in ecotoxicology", Appl. Microbiol. Bbiotechnol, 88, pp.1007~1025 (2010)
- 윤영대, "Modulating the Properties of Metal-Sensing Whole-Cell Bioreporters by Interfering with Escherichia coli Metal Homeostasis", Journal of Microbiology and Biotechnology, 28(2), pp.323~329 (2018), 한국미생물·생명공학회
- Kang Y, "Enhancing the copper-sensing capability of Escherichia coli-based whole-cell bioreporters by genetic engineering", Appl. Microbiol. Bbiotechnol, 102, pp.1513~1521 (2018)
- Kang Y, "Modulating the sensing properties of Escherichia coli-based bioreporters for cadmium and mercury", Appl. Microbiol. Bbiotechnol, 102, pp.4863~4872 (2018)
- Yoon Y, "Use of tunable whole-cell bioreporters to assess bioavailable cadmium and remediation performance in soils", PLoS One, 11, pp.e0154506~ (2016)
- Mingzhang Guo, "Using the promoters of MerR family proteins as “rheostats” to engineer whole-cell heavy metal biosensors with adjustable sensitivity", Journal of Biological Engineering, 13(1) (2019), Springer Science and Business Media LLC[DOI]
- Xu T, "Genetically modified whole-cell bioreporters for environmental assessment", Ecol. Indic, 28, pp.125~141 (2013)
- Cerminati S, "A sensitive whole-cell biosensor for the simultaneous detection of a broad-spectrum of toxic heavy metal ions", Chem. Commun, 51, pp.5917~5920 (2015)
- Ibáñez MM, "A single serine residue determines selectivity to monovalent metal ions in metalloregulators of the MerR family", J. Bacteriol, 197, pp.1606~1613 (2015)
- Changela A, "Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR", Science, 301, pp.1383~1387 (2003)
- Huang S, "Structural basis for the selective Pb(II)recognition of metalloregulatory protein PbrR691", Inorg. Chem, 55, pp.12516~12519 (2016)
- Khan S, "The functional analysis of directed amino-acid alterations in ZntR from Escherichia coli", Biochem. Biophys. Res. Commun, 299, pp.438~445 (2002)
- Rensing C, "CopA : an Escherichia coli Cu(I)-translocating P-type ATPase", Proc. Natl Acad. Sci, 97, pp.652~656 (2000)
- Stoyanov JV, "CueR(YbbI)of Escherichia coli is a MerR family regulator controlling expression of the copper exporter CopA", Mol. Microbiol, 39, pp.502~512 (2001)
- Belkin S, "Microbial whole-cell sensing systems of environmental pollutants", Current Opinion in Microbiology, 6, pp.206~212 (2003)
- Harms H, "Whole-cell living biosensors?re they ready for environmental application? Appl", Microbiol. Biotechnol, 70, pp.273~280 (2006)
- Leveau JH, "Bioreporters in microbial ecology", Curr. Opin. Microbiol, 5, pp.259~265 (2002)
- Wang B, "A modular cell-based biosensor using engineered genetic logic circuits to detect and integrate multiple environmental signals", Biosens. Bioelectron, 40, pp.368~376 (2013)
- Magrisso S, "Microbial reporters of metal bioavailability", Microb. Biotechnol, 1, pp.320~330 (2008)
- Brocklehurst KR, "ZntR is a Zn(II)‐responsive MerR‐like transcriptional regulator of zntA in Escherichia coli", Mol. Microbiol, 31, pp.893~902 (1999)
- Gireesh-Babu P, "Development of a broad-spectrum fluorescent heavy metal bacterial biosensor", Mol. Biol. Rep, 39, pp.11225~11229 (2012)
- Chen PR, "Spectroscopic insights into lead(II)coordination by the selective lead(II)-binding protein PbrR691", J. Am. Chem. Soc, 129, pp.12350~12351 (2007)
- Chen P, "An exceptionally selective lead(II)‐regulatory protein from ralstonia metallidurans : Development of a fluorescent lead(II)Probe", Angew. Chem. Int. Ed. Engl, 44, pp.2715~2719 (2005)
- Petersen C, "Control of copper homeostasis in Escherichia coli by a P-type ATPase, CopA, and a MerR-like transcriptional activator, CopR", Gene, 261, pp.289~298 (2000)
- Argüello JM, "The structure and function of heavy metal transport P 1B-ATPases", Biometals, 20, pp.233~248 (2007)
