Novel Qnr Families as Conserved and Intrinsic Quinolone Resistance Determinants in Aeromonas spp.

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참고문헌 (64)

1. Aminov RI, "The role of antibiotics and antibiotic resistance in nature", Environ. Microbiol, 11, pp.2970~2988 (2009)
2. Davies J, "Origins and evolution of antibiotic resistance", Microbiol. Mol. Biol. Rev, 74, pp.417~433 (2010)
3. D'Costa VM, "Sampling the antibiotic resistome", Science, 311, pp.374~377 (2006)
4. Surette MD, "Lessons from the environmental antibiotic resistome", Annu. Rev. Microbiol, 71, pp.309~329 (2017)
5. Perry JA, "The antibiotic resistome : what's new?", Curr. Opin. Microbiol, 21, pp.45~50 (2014)
6. Kim DW, "Antibiotic resistome from the one-health perspective : understanding and controlling antimicrobial resistance transmission", Exp. Mol. Med, 53, pp.301~309 (2021)
7. Larsson D, "Antibiotic resistance in the environment", Nat. Rev. Microbiol, 20, pp.257~269 (2022)
8. Pessoa RBG, "The genus Aeromonas : a general approach", Microb. Pathog, 130, pp.81~94 (2019)
9. Beaz-Hidalgo R, "Aeromonas spp. whole genomes and virulence factors implicated in fish disease", J. Fish Dis, 36, pp.371~388 (2013)
10. Janda JM, "The genus Aeromonas : taxonomy, pathogenicity, and infection", Clin. Microbiol. Rev, 23, pp.35~73 (2010)
11. Baron S, "Aeromonas diversity and antimicrobial susceptibility in freshwater—an attempt to set generic epidemiological cut-off values", Front. Microbiol, 8, pp.231406~ (2017)
12. Citterio B, "Aeromonas hydrophila virulence", Virulence, 6, pp.417~418 (2015)
13. Reines HD, "Pneumonia and bacteremia due to Aeromonas hydrophila", Chest, 80, pp.264~267 (1981)
14. Brouqui P, "Endocarditis due to rare and fastidious bacteria", Clin. Microbiol. Rev, 14, pp.177~207 (2001)
15. Chen PL, "Aeromonas dhakensis, an increasingly recognized human pathogen", Front. Microbiol, 7, pp.198504~ (2016)
16. Pessoa R, "Molecular characterization and evaluation of virulence traits of Aeromonas spp. isolated from the tambaqui fish (Colossoma macropomum)", Microb. Pathog, 147, pp.104273~ (2020)
17. Bello-López JM, "Horizontal gene transfer and its association with antibiotic resistance in the genus Aeromonas spp", Microorganisms, 7, pp.363~ (2019)
18. Piotrowska M, "The prevalence of antibiotic resistance genes among Aeromonas species in aquatic environments", Ann. Microbiol, 64, pp.921~934 (2014)
19. Lee K, "Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance", Microbiome, 8, pp.2~ (2020)
20. Marti E, "The role of aquatic ecosystems as reservoirs of antibiotic resistance", Trends Microbiol, 22, pp.36~41 (2014)
21. Baquero F, "Antibiotics and antibiotic resistance in water environments", Curr. Opin. Biotechnol, 19, pp.260~265 (2008)
22. Lesher GY, "1, 8-Naphthyridine derivatives. A new class of chemotherapeutic agents", J. Med. Chem, 5, pp.1063~1065 (1962)
23. Pham TD, "Quinolone antibiotics", Medchemcomm, 10, pp.1719~1739 (2019)
24. Hooper DC, "Mechanisms of drug resistance : quinolone resistance", Ann. N. Y. Acad. Sci, 1354, pp.12~31 (2015)
25. Aldred KJ, "Mechanism of quinolone action and resistance", Biochemistry, 53, pp.1565~1574 (2014)
26. Bush NG, "Quinolones : mechanism, lethality and their contributions to antibiotic resistance", Molecules, 25, pp.5662~ (2020)
27. Rodríguez-Martínez JM, "Plasmid-mediated quinolone resistance : two decades on", Drug Resist. Updat, 29, pp.13~29 (2016)
28. Ruiz J, "Transferable mechanisms of quinolone resistance from 1998 onward", Clin. Microbiol. Rev, 32, pp.e00007-19~ (2019)
29. Martínez-Martínez L, "Quinolone resistance from a transferable plasmid", Lancet, 351, pp.797~799 (1998)
30. Fàbrega A, "Mechanism of action of and resistance to quinolones", Microb. Biotechnol, 2, pp.40~61 (2009)
31. Jacoby GA, "Phylogenetic analysis of chromosomally determined qnr and related proteins", Antimicrob. Agents Chemother, 57, pp.1930~1934 (2013)
32. Hegde SS, "A fluoroquinolone resistance protein from Mycobacterium tuberculosis that mimics DNA", Science, 308, pp.1480~1483 (2005)
33. Shimizu K, "Smqnr, a new chromosome-carried quinolone resistance gene in Stenotrophomonas maltophilia", Antimicrob. Agents Chemother, 52, pp.3823~3825 (2008)
34. Velasco C, "Smaqnr, a new chromosome-encoded quinolone resistance determinant in Serratia marcescens", J. Antimicrob. Chemother, 65, pp.239~242 (2010)
35. Rodríguez-Martínez J, "Qnr-like pentapeptide repeat proteins in Grampositive bacteria", J. Antimicrob. Chemother, 61, pp.1240~1243 (2008)
36. Xiong X, "Structural insights into quinolone antibiotic resistance mediated by pentapeptide repeat proteins : conserved surface loops direct the activity of a Qnr protein from a Gram-negative bacterium", Nucleic Acids Res, 39, pp.3917~3927 (2011)
37. Poirel L, "Origin of plasmid-mediated quinolone resistance determinant QnrA", Antimicrob. Agents Chemother, 49, pp.3523~3525 (2005)
38. Cattoir V, "Unexpected occurrence of plasmid-mediated quinolone resistance determinants in environmental Aeromonas spp", Emerg. Infect. Dis, 14, pp.231~ (2008)
39. Xia R, "qnrVC-like gene located in a novel complex class 1 integron harboring the IS CR1 element in an Aeromonas punctata strain from an aquatic environment in Shandong Province, China", Antimicrob Agents Chemother, 54, pp.3471~3474 (2010)
40. Sánchez MB, "Predictive analysis of transmissible quinolone resistance indicates Stenotrophomonas maltophilia as a potential source of a novel family of Qnr determinants", BMC Microbiol, 8, pp.148~ (2008)
41. Weisburg WG, "16S ribosomal DNA amplification for phylogenetic study", J. Bacteriol, 173, pp.697~703 (1991)
42. Yoon SH, "Introducing EzBioCloud : a taxonomically united database of 16S rRNA and whole genome assemblies", Int. J. Syst. Evol. Microbiol, 67, pp.1613~1617 (2017)
43. Wiegand I, "Agar and broth dilution methods to determine the minimal inhibitory concentration(MIC)of antimicrobial substances", Nat. Protoc, 3, pp.163~175 (2008)
44. Chin CS, "Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data", Nat. Methods, 10, pp.563~569 (2013)
45. Seemann T, "Prokka : rapid prokaryotic genome annotation", Bioinformatics, 30, pp.2068~2069 (2014)
46. Jain C, "High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries", Nat. Commun, 9, pp.5114~ (2018)
47. Bayliss SC, "PIRATE : a fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria", Gigascience, 8, pp.giz119~ (2019)
48. Nakamura T, "Parallelization of MAFFT for large-scale multiple sequence alignments", Bioinformatics, 34, pp.2490~2492 (2018)
49. Price MN, "FastTree 2–approximately maximum-likelihood trees for large alignments", PLoS One, 5, pp.e9490~ (2010)
50. Letunic I, "Interactive Tree Of Life(iTOL)v5 : an online tool for phylogenetic tree display and annotation", Nucleic Acids Res, 49, pp.W293~W296 (2021)
51. Alcock BP, "CARD 2023 : expanded curation, support for machine learning, and resistome prediction at the comprehensive antibiotic resistance database", Nucleic Acids Res, 51, pp.D690~D699 (2023)
52. Fu L, "CD-HIT : accelerated for clustering the next-generation sequencing data", Bioinformatics, 28, pp.3150~3152 (2012)
53. Mirdita M, "ColabFold : making protein folding accessible to all", Nat. Methods, 19, pp.679~682 (2022)
54. Meng EC, "UCSF ChimeraX : tools for structure building and analysis", Protein Sci, 32, pp.e4792~ (2023)
55. Vetting MW, "Pentapeptide repeat proteins", Biochemistry, 45, pp.1~10 (2006)
56. Park KS, "Determination of pentapeptide repeat units in Qnr proteins by the structure-based alignment approach", Antimicrob. Agents Chemother, 55, pp.4475~4478 (2011)
57. Nilsson SV, "Sealing of gaps in duplex DNA by T4 DNA ligase", Nucleic Acids Res, 10, pp.1425~1437 (1982)
58. Barco R, "A genus definition for bacteria and archaea based on a standard genome relatedness index", mBio, 11, pp.e02475-19~ (2020)
59. Strahilevitz J, "Plasmid-mediated quinolone resistance : a multifaceted threat", Clin. Microbiol. Rev, 22, pp.664~689 (2009)
60. Vetting MW, "Structure of QnrB1, a plasmid-mediated fluoroquinolone resistance factor", J. Biol. Chem, 286, pp.25265~25273 (2011)
61. Hegde SS, "Structural and biochemical analysis of the pentapeptide repeat protein EfsQnr, a potent DNA gyrase inhibitor", Antimicrob. Agents Chemother, 55, pp.110~117 (2011)
62. Takeshita S, "High-copy-number and low-copy-number plasmid vectors for lacZα-complementation and chloramphenicol-or kanamycin-resistance selection", Gene, 61, pp.63~74 (1987)
63. Poirel L, "Vibrionaceae as a possible source of Qnr-like quinolone resistance determinants", J. Antimicrob. Chemother, 56, pp.1118~1121 (2005)
64. Feng L, "The pentapeptide-repeat protein, MfpA, interacts with mycobacterial DNA gyrase as a DNA T-segment mimic", Proc. Natl. Acad. Sci. USA, 118, pp.e2016705118~ (2021)

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