본문 바로가기
KERD
논문KCI 등재

A report of 21 unreported bacterial species in Korea, belonging to the Betaproteobacteria

1

조회

0

다운로드

0

인용

0

참고문헌

키워드

주제분류생물학

초록

As a subset investigation to discover indigenous prokaryotic species in Korea, a total of 21 bacterial strains assigned to the class Betaproteobacteria were isolated from a wide range of environmental samples which collected from fresh water, roots of plants, mineral water and soil from ginseng farm. Phylogenetic analysis based on 16S rRNA gene sequences indicated that 21 isolated strains were most closely related to the class Betaproteobacteria, with high 16S rRNA gene sequence similarity (>99.1%) and constructed a robust phylogenetic clade with the closest species in the class Betaproteobacteria. These isolated species have no previous report or publication in Korea; therefore 17 species in 14 genera of 6 families in the order Burkholderiales, 1 species in the order Methylophilales, 2 species in 2 genera of 1 family in the order Neisseriales are reported for betaproteobacterial species found in Korea. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are also described in the species description section and as an image.

Abstract

As a subset investigation to discover indigenous prokaryotic species in Korea, a total of 21 bacterial strains assigned to the class Betaproteobacteria were isolated from a wide range of environmental samples which collected from fresh water, roots of plants, mineral water and soil from ginseng farm. Phylogenetic analysis based on 16S rRNA gene sequences indicated that 21 isolated strains were most closely related to the class Betaproteobacteria, with high 16S rRNA gene sequence similarity (>99.1%) and constructed a robust phylogenetic clade with the closest species in the class Betaproteobacteria. These isolated species have no previous report or publication in Korea; therefore 17 species in 14 genera of 6 families in the order Burkholderiales, 1 species in the order Methylophilales, 2 species in 2 genera of 1 family in the order Neisseriales are reported for betaproteobacterial species found in Korea. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are also described in the species description section and as an image.

참고문헌 (16)

  1. Ash, C., "Comparative analysis of Bacillus anthracis, Bacillus cereus, and related species on the basis of reverse transcriptase sequencing of 16S rRNA", International Journal of Systematic Bacteriology, 41(3), pp.343~346 (1991)
  2. Felsenstein, J., "Evolutionary trees from DNA sequences: a maximum likelihood approach", J. Mol. Evol, 17(6), pp.368~376 (1981)
  3. Garrity, G. M., "Class II. Betaproteobacteria class. nov. Bergey’s manual® of systematic bacteriology", pp.575~922 (2005), Springer
  4. Hall, T.A., "BIOEDIT: a user-friendly biological sequence alignment editor and analysis program for Windows 95", 98, Nucleic. Acids. Symp. Ser, pp.1999, 41[DOI]
  5. Kim, O. S., "Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species", Int. J. Syst. Evol. Microbiol, 62(Pt 3), pp.716~721 (2012)
  6. Kluge, A.G., "Quantitative phyletics and the evolution of anurans", Syst. Zool, 18, pp.1~32 (1969)
  7. Lagier, J. C., "Microbial culturomics: paradigm shift in the human gut microbiome study", Clinical Microbiology and Infection, 18(12), pp.1185~1193 (2012)
  8. Lane, D.J., "Nucleic Acid Techniques in Bacterial Systematics. E. Stackebrandt and M. Goodfellow", pp.115~175 (1991), Wiley
  9. Liu, Z., "Short pyrosequencing reads suffice for accurate microbial community analysis", Nucleic Acids Research, 35(18), pp.e120~ (2007)
  10. Saitou, N., "The neighbor-joining method: a new method for reconstructing phylogenetic trees", Mol. Biol. Evol, 4(4), pp.406~425 (1987)
  11. Shigematsu, T., "Community structure analysis based on liquid cultivation and its application to a marine environment", FEMS Microbiology Letters, 293(2), pp.240~247 (2009)
  12. Sogin, M. L., "Microbial diversity in the deep sea and the underexplored “rare biosphere”", Proceedings of the National Academy of Sciences, 103(32), pp.12115~12120 (2006)
  13. Tamura, K., "MEGA6: molecular evolutionary genetics analysis version 6.0", Molecular Biology and Evolution, 30(12), pp.2725~2729 (2013)
  14. Thompson, J. D., "CLU STAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice", Nucleic. Acids. Res, 22(22), pp.4673~4680 (1994)
  15. Turnbaugh, P. J., "The human microbiome project: exploring the microbial part of ourselves in a changing world", Nature, 449(7164), pp.804~ (2007)
  16. Whitman, W. B., "Prokaryotes: the unseen majority", Proceedings of the National Academy of Sciences, 95(12), pp.6578~6583 (1998)

관련 논문AI추천

A report of 35 unrecorded bacterial species belonging to the classes Alphaproteobacteria and Betaproteobacteria in Korea김명겸, 김승범, 김원용, 성치남, 윤정훈, 임완택, 전체옥, 정혜수, 조기성, 차창준국립생물자원관 · Journal of Species Research2021 · 제10권 제1호A report of 39 unrecorded bacterial species in Korea, belonging to the Betaproteobacteria and Gammaproteobacteria김승범, 성치남, 임완택, 조장천, Ahyoung Choi, CHANG-JUN CHA, Che Ok Jeon, Jin-Woo Bae, Jongsik Chun, Jung-Hoon Yoon, KISEONG JOH, Kwang-Yeop Jahng국립생물자원관 · Journal of Species Research2015 · 제4권 제2호A report of 39 unrecorded bacterial species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria isolated in 2018김명겸, 김승범, 김용석, 김원용, 성치남, 임완택, 전체옥, 차창준, Hana Yi, KISEONG JOH국립생물자원관 · Journal of Species Research2020 · 제9권 제4호A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria김명겸, 김승범, 배진우, 성치남, 윤정훈, 이순동, 이하나, 임완택, 전체옥, 정희수, 조기성, 조장천, 차창준국립생물자원관 · Journal of Species Research2019 · 제8권 제2호A report on 30 unrecorded bacteria species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria in 2021김명겸, 김승범, 전체옥, Chang-Jun Cha, Jung-Hoon Yoon, Kiseong Joh, Wan-Taek Im, Won Yong Kim, YUNJEONGLEE국립생물자원관 · Journal of Species Research2023 · 제12권 제3호Report of 29 unrecorded bacterial species from the phylum Proteobacteria남윤종, 박상화, 백기원, 이미화, 한지혜국립생물자원관 · Journal of Species Research2018 · 제7권 제1호

이 간행물의 다른 논문 (9건)