Description of unrecorded bacterial species belonging to the phylum Actinobacteria in Korea
2
조회
0
다운로드
1
인용
0
참고문헌
키워드
초록
For the collection of indigenous prokaryotic species in Korea, 77 strains within the phylum Actinobacteria were isolated from various environmental samples, fermented foods, animals and clinical specimens in 2019. Each strain showed high 16S rRNA gene sequence similarity (>98.8%) and formed a robust phylogenetic clade with actinobacterial species that were already defined and validated with nomenclature. There is no official description of these 77 bacterial species in Korea. The isolates were assigned to 77 species, 31 genera, 18 families, 14 orders and 2 classes of the phylum Actinobacteria. All the strains except one Coriobacteriia strain were affiliated within the class Actinomycetia. Among them, the orders Streptomycetales and Microbacteriales were predominant. A number of strains were isolated from forest soils, riverside soils, and ginseng cultivated soils. Twenty-nine strains were isolated from ‘Protected Ecosystem and Scenery Areas’. Morphological properties, basic biochemical characteristics, isolation source and strain IDs are described in the species descriptions.
Abstract
For the collection of indigenous prokaryotic species in Korea, 77 strains within the phylum Actinobacteria were isolated from various environmental samples, fermented foods, animals and clinical specimens in 2019. Each strain showed high 16S rRNA gene sequence similarity (>98.8%) and formed a robust phylogenetic clade with actinobacterial species that were already defined and validated with nomenclature. There is no official description of these 77 bacterial species in Korea. The isolates were assigned to 77 species, 31 genera, 18 families, 14 orders and 2 classes of the phylum Actinobacteria. All the strains except one Coriobacteriia strain were affiliated within the class Actinomycetia. Among them, the orders Streptomycetales and Microbacteriales were predominant. A number of strains were isolated from forest soils, riverside soils, and ginseng cultivated soils. Twenty-nine strains were isolated from ‘Protected Ecosystem and Scenery Areas’. Morphological properties, basic biochemical characteristics, isolation source and strain IDs are described in the species descriptions.
참고문헌 (24)
- Kyung Sook Bae, "Korean indigenous bacterial species with valid names belonging to the phylum Actinobacteria", The Journal of Microbiology, 54(12), pp.789~795 (2016), 한국미생물학회[DOI]
- Chang-Jun Cha, "Report on 31 unrecorded bacterial species in Korea that belong to the phylum Actinobacteria", Journal of Species Research, 5(1), pp.1~13 (2016), 국립생물자원관
- Chun, J., "A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences", Int J Syst Bacteriol, 45(2), pp.240~245 (1995)
- Dangel, A., "NGS-based phylogeny of diphtheria-related pathogenicity fac-tors in different Corynebacterium spp. implies species-specific virulence transmission", BMC Microbiol, 19(1), pp.28~ (2019)
- Felsenstein, J, "Evolutionary trees from DNA sequences : a maximum likelihood approach", J Mol Evol, 17(6), pp.368~376 (1981)
- Felsenstein, J, "Confidence limit on phylogenies : an appro-ach using the bootstrap", Evolution, 39(4), pp.783~791 (1985)
- Fitch, W. M, "Toward defining the course of evolution : minimum change for a specific tree topology", Syst Zool, 20(4), pp.406~416 (1971)
- Goodfellow, M, "Bergey’s Manual of Systematic Bacteriology vol. 5", pp.33~34 (2012), Springer
- Goodfellow, M., "Ecology of Actino-mycetes", Annu Rev Microbiol, 37, pp.189~216 (1983)
- Hall, T. A, "BioEdit : a user-friendly biological sequence alignment editor and analysis program for Windows 95", 98, Nucleic Acids Symp Ser, pp.1999, 41[DOI]
- Hwang, I. S., "Functional Characterization of Two Cellulase Genes in the Gram-Posi-tive Pathogenic Bacterium Clavibacter michiganensis for Wilting in Tomato", Mol Plant Microbe Interact, 32(4), pp.491~501 (2019)
- Jukes, T. H., "Mammalian Protein Meta-bolism", pp.21~132 (1969), Academic Press
- 성치남, "A report of 38 unrecorded bacterial species in Korea, belonging to the phylum Actinobacteria", Journal of Species Research, 5(2), pp.223~234 (2016), 국립생물자원관
- 김미선, "Unrecorded bacterial species belonging to the phylum Actinobacteria originated from Republic of Korea", Journal of Species Research, 6(1), pp.25~41 (2017), 국립생물자원관
- 김미선, "Unrecorded prokaryotic species belonging to the class Actinobacteria in Korea", Journal of Species Research, 8(1), pp.97~108 (2019), 국립생물자원관[DOI]
- 고관수, "A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria", Journal of Species Research, 6(1), pp.1~14 (2017), 국립생물자원관
- 이나영, "A report of 42 unrecorded actinobacterial species in Korea", Journal of Species Research, 7(1), pp.36~49 (2018), 국립생물자원관[DOI]
- Qin, S., "Bio-diversity, bioactive natural products and biotechnological potential of plant-associated endophytic actinobacteria", Appl Microbiol Biotechnol, 89(3), pp.457~473 (2011)
- Saitou, N., "The neighbor-joining method : a new method for reconstructing phylogenetic trees", Mol Biol Evol, 4(4), pp.406~425 (1987)
- Salam, N., "Update on the classification of higher ranks in the phylum Actinobac-teria", Int J Syst Evol Microbiol, 70(2), pp.1331~1355 (2020)
- Servin, J. A., "Evidence excluding the root of the tree of life from the actinobacteria", Mol Biol Evol, 25(1), pp.1~4 (2008)
- Tamura, K., "MEGA6: Molecular Evolutionary Genetics Analysis version 6.0", Mol Biol Evol, 30(12), pp.2725~2729 (2013)
- Thompson, J. D., "CLUSTAL W : improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice", Nucleic Acids Res, 22(22), pp.4673~4680 (1994)
- Yoon, S. H., "Introducing EzBioCloud: a taxonomi-cally united database of 16S rRNA gene sequences and whole-genome assemblies", Int J Syst Evol Microbiol, 67(5), pp.1613~1617 (2017)