A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria
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초록
As a subset study to discover indigenous prokaryotic species in Korea in 2014, a total of 34 bacterial strains assigned to the phylum Actinobacteria were isolated from various environmental samples collected from activate sludge, biotite, freshwater, gut of marine organisms, mud flat, sediment, soil, spent mushroom compost and sea water. On the basis of high 16S rRNA gene sequence similarity and a tight phylogenetic association with the closest species, it was revealed that each strain was assigned to independent and previously described bacterial species, with the exception of one isolate. There is no official report that these 34 species included in the phylum Actinobacteria have been described in Korea: 6 species of 5 genera in the order Corynebacteriales, 1 species of 1 genus in the order Frankiales, 2 species of 2 genera in the Micromonosporales, 14 species of 10 genera in Micrococcales, 2 species of 2 genera in the Propionibacteriales, 1 species of 1 genus in the Pseudonocardiales, 4 species of 2 genera in the Streptomycetales, 2 species of 2 genera in the Streptosporangiales and 1 species of 1 genus in the Solirubrobacterales. Gram reaction, cell and colony morphology, pigmentation, physiological characteristics, isolation sources and strain IDs are described in the section of species description.
Abstract
As a subset study to discover indigenous prokaryotic species in Korea in 2014, a total of 34 bacterial strains assigned to the phylum Actinobacteria were isolated from various environmental samples collected from activate sludge, biotite, freshwater, gut of marine organisms, mud flat, sediment, soil, spent mushroom compost and sea water. On the basis of high 16S rRNA gene sequence similarity and a tight phylogenetic association with the closest species, it was revealed that each strain was assigned to independent and previously described bacterial species, with the exception of one isolate. There is no official report that these 34 species included in the phylum Actinobacteria have been described in Korea: 6 species of 5 genera in the order Corynebacteriales, 1 species of 1 genus in the order Frankiales, 2 species of 2 genera in the Micromonosporales, 14 species of 10 genera in Micrococcales, 2 species of 2 genera in the Propionibacteriales, 1 species of 1 genus in the Pseudonocardiales, 4 species of 2 genera in the Streptomycetales, 2 species of 2 genera in the Streptosporangiales and 1 species of 1 genus in the Solirubrobacterales. Gram reaction, cell and colony morphology, pigmentation, physiological characteristics, isolation sources and strain IDs are described in the section of species description.
참고문헌 (21)
- Ensign, J.C., "The Prokaryotes, vol. 1", pp.811~815 (1992), Springer Verlag
- Felsenstein, J., "Evolutionary trees from DNA sequences: a maximum likelihood approach", Journal of Molecular Evolution, 17, pp.368~376 (1981)
- Felsenstein, J, "Confidence limits on phylogenies : an approach using the bootstrap", Evolution, 39, pp.783~791 (1985)
- Felsenstein, J., "PHYLIP (phylogeny inference package), version 3.68", Department of Genetics, pp.2008
- Fitch, W. M., "Towards defining the course of course of evolution : minimum change for a specific tree topology", Systematic Zoology, 20, pp.406~416 (1971)
- Goodfellow, M., "A guide to successful bio-prospecting : informed by actinobacterial systematics", Antonie van Leeuwenhoek, 98, pp.119~142 (2010)
- Goodfellow, M., "The Biology of Actinomycetes", pp.7~164 (1984), Academic Press
- Goodfellow, M., "Bergey’s Manual of Systematic Bacteriology, vol. 5", pp.376~419 (2012), Springer
- Jukes, T.H., "Mammalian Protein Metabolism", pp.21~132 (1969), Academic Press
- Kämpfer, P., "Bergey’s Manual of Systematic Bacteriology, vol. 5", pp.1768~1777 (2012), Springer
- Kämpfer, P., "Bergey’s Manual of Systematic Bacteriology, vol. 5", pp.1455~1767 (2012), Springer
- Kim, O. S., "Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species", International Journal of Systematic and Evolutionary Microbiology, 62, pp.716~721 (2012)
- Ludwig W., "Bergey’s Manual of Systematic Bacteriology, vol. 5", pp.1~28 (2012), Springer
- Quintana, E.T., "Bergey’s Manual of Systematic Bacteriology, vol. 5", pp.1811~1825 (2012), Springer
- Reddy, G.S.N., "Description of Patulibacter americanus sp. nov., isolated from biological soil crusts, emended description of the genus Patulibacter Takahashi et al. 2006 and proposal of Solirubrobacterales ord. nov. and Thermoleophilales ord. nov", International Journal of Systematic and Evolutionary Microbiology, 59, pp.87~94 (2009)
- Saitou, N., "The neighbor-joining method: a new method for reconstructing phylogenetic trees", Molecular Biology and Evolution, 4, pp.406~425 (1987)
- Shirling, E.B., "Methods for characterization of Streptomyces species", International Journal of Systematic Bacteriology, 16, pp.313~340 (1966)
- Thompson, J. D., "The ClustalX windows interface : flexible strategies for multiple sequence alignment aided by quality analysis tools", Nucleic Acids Research, 24, pp.4876~4882 (1997)
- Trujillo, M.E., "Bergey’s Manual of Systematic Bacteriology, vol. 5", pp.1940~1959 (2012), Springer
- Waksman, S.A., "Bacteriostatic and bactericidal substances produced by a soil actinomycetes", Proceedings of the Society for Experimental Biology and Medicine, 45, pp.609~614 (1940)
- Williams, S. T., "The Biology of Actinomycetes", pp.481~528 (1984), Academic Press