본문 바로가기
KERD
논문KCI 등재

고체상 나노구멍을 이용한 DNA 염기서열 분석 기술

DNA Sequencing Analysis Technique by Using Solid-State Nanopore

0

조회

0

다운로드

1

인용

0

참고문헌

키워드

주제분류공학일반

초록

Nanopore DNA sequencing is an emerging and promising technique that can potentially realize the goal of a low-cost and highthroughput method for analyzing human genome. Especially, solid-state nanopores have relatively high mechanical stability, simple surface modification, and facile fabrication process without the need for labeling or amplification of PCR (polymerized chain reaction) in DNA sequencing. For these advantages of solid-sate nanopores, the use of solid-state nanopores has been extensively considered for developing a next generation DNA sequencing technology. Solid-state nanopore sequencing technique can determine and count charged molecules such as single-stranded DNA, double-stranded DNA, or RNA when they are driven to pass through a membrane nanopore between two electrolytes of cis-trans chambers with applied bias voltage by measuring the ionic current which varies due to the existence of the charged particles in the nanopore. Recently, many researchers have suggested that nanopore-based sensors can be competitive with other third-generation DNA sequencing technologies, and may be able to rapidly and reliably sequence the human genome for under $1,000.

Abstract

Nanopore DNA sequencing is an emerging and promising technique that can potentially realize the goal of a low-cost and highthroughput method for analyzing human genome. Especially, solid-state nanopores have relatively high mechanical stability, simple surface modification, and facile fabrication process without the need for labeling or amplification of PCR (polymerized chain reaction) in DNA sequencing. For these advantages of solid-sate nanopores, the use of solid-state nanopores has been extensively considered for developing a next generation DNA sequencing technology. Solid-state nanopore sequencing technique can determine and count charged molecules such as single-stranded DNA, double-stranded DNA, or RNA when they are driven to pass through a membrane nanopore between two electrolytes of cis-trans chambers with applied bias voltage by measuring the ionic current which varies due to the existence of the charged particles in the nanopore. Recently, many researchers have suggested that nanopore-based sensors can be competitive with other third-generation DNA sequencing technologies, and may be able to rapidly and reliably sequence the human genome for under $1,000.

참고문헌 (33)

  1. P. K. Gupta, "Single-molecule DNA sequencing technologies for future genomics research", Trends in Biotechnology, 26, pp.602~611 (2008)
  2. E. R. Mardis, "Next-generation DNA sequencing methods", Annual Review of Genomics and Human Genetics, 9, pp.387~402 (2008)
  3. M. L. Metzker, "Sequencing technologies the next generation", Nature Reviews Genetics, 11, pp.31~46 (2010)
  4. B. M. Venkatesan, "Nanopore sensors for nucleic acid analysis", Nature Nanotechnology, 6, pp.615~624 (2010)
  5. A. Kahvejian, "What would you do if you could sequence everything?", Nature Biotechnology, 26, pp.1125~1133 (2008)
  6. B. Luan, "Slowing and controlling the translocation of DNA in a solidstate nanopore", Nanoscale, 4, pp.1068~1077 (2012)
  7. Y. Astier, "Toward single molecule DNA sequencing : Direct identification of ribonucleoside and deoxyribonucleoside 5-monophosphates by using an engineered protein nanopore equipped with a molecular adapter", Journal of the American Chemical Society, 128, pp.1705~1710 (2006)
  8. J. Clarke, "Continuous base identification for single-molecule nanopore DNA sequencing", Nature Nanotechnology, 4, pp.265~270 (2009)
  9. I. M. Derrington, "Nanopore DNA sequencing with MspA", PNAS, 107, pp.16060~16065 (2010)
  10. X. Liang, "Nanogap detector inside nanofluidic channel for fast real-time label-free DNA analysis", Nano Letters, 8, pp.1472~1476 (2008)
  11. H. W. Ch Postma, "Rapid sequencing of individual DNA molecules in graphene nanogaps", Nano Letters, 10, pp.420~425 (2010)
  12. 아밋멜러, "Nanopore Based Sequence Specific Detection of Duplex DNA for Genomic Profiling", NANO LETTERS, 10(2), pp.738~742, AMER CHEMICAL SOC
  13. A. J. Storm, "Fabrication of solidstate nanopores with single-nanometre precision", Nature Materials, 2, pp.537~540 (2003)
  14. B. M. Venkatesan, "DNA sensing using nanocrystalline surface-enhanced Al2O3 nanopore sensors", Advanced Functional Materials, 20, pp.1266~1275 (2010)
  15. H. Liu, "Translocation of single-stranded DNA through single-walled carbon nanotubes", Science, 327, pp.64~67 (2010)
  16. R. Fan, "DMA translocation in inorganic nanotubes", Nano Letters, 5, pp.1633~1637 (2005)
  17. K. Healy, "Solidstate nanopore technologies for nanopore-based DNA analysis", Nanomedicine, 2, pp.875~897 (2007)
  18. B. M. Venkatesan, "Highly sensitive, mechanically stable nanopore sensors for DNA analysis", Advanced Materials, 21, pp.2771~2776 (2009)
  19. J. Li, "Ion-beam sculpting at nanometre length scales", Nature, 412, pp.166~169 (2001)
  20. C. J. Russo, "Atom-by-atom nucleation and growth of graphene nanopores", PNAS, 109, pp.5953~5957 (2012)
  21. S. Garaj, "Graphene as a subnanometre trans-electrode membrane", Nature, 467, pp.190~193 (2010)
  22. G. F. Schneider, "DNA translocation through graphene nanopores", Nano Letters, 10, pp.3163~3167 (2010)
  23. B. Song, "Atomic-scale electronbeam sculpting of near-defect-free graphene nanostructures", Nano Letters, 11, pp.2247~2250 (2011)
  24. A. R. Hall, "Hybrid pore formation by directed insertion of-haemolysin into solid-state nanopores", Nature Nanotechnology, 5, pp.874~877 (2010)
  25. S. M. Iqbal, "Solid-state nanopore channels with DNA selectivity", Nature Nanotechnology, 2, pp.243~248 (2007)
  26. T. Nelson, "Detection of nucleic acids with graphene nanopores : Ab initio characterization of a novel sequencing device", Nano Letters, 10, pp.3237~3242 (2010)
  27. 가와이, "Identifying single nucleotides by tunnelling current", NATURE NANOTECHNOLOGY, 5, pp.286~290, NATURE PUBLISHING GROUP
  28. S. K. Min, "Fast DNA sequencing with a graphene-based nanochannel device", NATURE NANOTECHNOLOGY, 6(3), pp.162~165, NATURE PUBLISHING GROUP
  29. J. K. Rosenstein, "Integrated nanopore sensing platform with sub-microsecond temporal resolution", Nature Methods, 9, pp.487~492 (2012)
  30. M. Tsutsui, "Fabrication of 0. 5 nm electrode gaps using self-breaking technique", Applied Physics Letters, 93 (2008)

관련 논문AI추천

이 간행물의 다른 논문 (11건)