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Senior Thai Fecal Microbiota Comparison Between Vegetarians and Non-Vegetarians Using PCR-DGGE and Real-Time PCR

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초록

The fecal microbiotas were investigated in 13 healthy Thai subjects using polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE). Among the 186 DNA bands detected on the polyacrylamide gel, 37 bands were identified as representing 11 species: Bacteroides thetaiotaomicron, Bacteroides ovatus, Bacteroides uniformis, Bacteroides vulgatus, Clostridium colicanis, Eubacterium eligenes, E. rectale, Faecalibacterium prausnitzii, Megamonas funiformis, Prevotella copri, and Roseburia intestinalis, belonging mainly to the groups of Bacteroides, Prevotella, Clostridium, and F. prausnitzii. A dendrogram of the PCR-DGGE divided the subjects; vegetarians and non-vegetarians. The fecal microbiotas were also analyzed using a quantitative real-time PCR focused on Bacteroides, Bifidobacterium, Enterobacteriaceae, Clostrium coccoides-Eubacterium rectale, C. leptum, Lactobacillus, and Prevotella. The nonvegetarian and vegetarian subjects were found to have significant differences in the high abundance of the Bacteroides and Prevotella genera, respectively. No significant differences were found in the counts of Bifidabacterium, Enterobacteriaceae, C. coccoides-E. rectale group, C. leptum group, and Lactobacillus. Therefore, these findings on the microbiota of healthy Thais consuming different diets could provide helpful data for predicting the health of South East Asians with similar diets.

Abstract

The fecal microbiotas were investigated in 13 healthy Thai subjects using polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE). Among the 186 DNA bands detected on the polyacrylamide gel, 37 bands were identified as representing 11 species: Bacteroides thetaiotaomicron, Bacteroides ovatus, Bacteroides uniformis, Bacteroides vulgatus, Clostridium colicanis, Eubacterium eligenes, E. rectale, Faecalibacterium prausnitzii, Megamonas funiformis, Prevotella copri, and Roseburia intestinalis, belonging mainly to the groups of Bacteroides, Prevotella, Clostridium, and F. prausnitzii. A dendrogram of the PCR-DGGE divided the subjects; vegetarians and non-vegetarians. The fecal microbiotas were also analyzed using a quantitative real-time PCR focused on Bacteroides, Bifidobacterium, Enterobacteriaceae, Clostrium coccoides-Eubacterium rectale, C. leptum, Lactobacillus, and Prevotella. The nonvegetarian and vegetarian subjects were found to have significant differences in the high abundance of the Bacteroides and Prevotella genera, respectively. No significant differences were found in the counts of Bifidabacterium, Enterobacteriaceae, C. coccoides-E. rectale group, C. leptum group, and Lactobacillus. Therefore, these findings on the microbiota of healthy Thais consuming different diets could provide helpful data for predicting the health of South East Asians with similar diets.

참고문헌 (36)

  1. Arumugam M, "Enterotypes of the human gut microbiome", Nature, 473, pp.174~180 (2011)
  2. Attasara P, "Hospital-based Cancer Registry 2011", pp.1~4 (2012), Information Technology Division, National Cancer Institute
  3. Bartosch S, "Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota", Appl. Environ. Microbiol, 70, pp.3575~3581 (2004)
  4. Benno Y, "Comparison of fecal microflora of elderly persons in rural and urban areas of Japan", Appl. Environ. Microbiol, 55, pp.1100~1105 (1989)
  5. Claesson MJ, "Gut microbiota composition correlates with diet and health in the elderly", Nature, 488, pp.178~184 (2012)
  6. Clarridge J., "Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases", Clin. Microbiol. Rev, 17, pp.840~862 (2004)
  7. Crowe FL, "Fruit and vegetable intake and mortality from ischaemic heart disease: results from the European Prospective Investigation into Cancer and Nutrition (EPIC)-Heart study", Eur. Heart J, 465, pp.1~9 (2011)
  8. De Filippo C, "Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa", PNAS, 107, pp.14691~14696 (2010)
  9. Dethlefsen L, "Assembly of the human intestinal microbiota", Trends Ecol. Evol, 21, pp.517~523 (2006)
  10. Favier CF, "Molecular monitoring of succession of bacterial communities in human neonates", Appl. Environ. Microbiol, 68, pp.219~226 (2002)
  11. Haarman M, "Quantitative real-time PCR analysis of fecal Lactobacillus species in infants receiving a prebiotic infant formula", Appl. Environ. Microbiol, 72, pp.2359~2365 (2006)
  12. Hayashi H, "Fecal microbial diversity in a strict vegetarian as determined by molecular analysis and culture cultivation", Microbiol. Immunol, 46, pp.819~831 (2002)
  13. Hayashi H, "Molecular analysis of fecal microbiota in elderly individuals 16S rDNA libraries and T-RFLP", Microbiol. Immunol, 47, pp.5557~5570 (2003)
  14. Hayashi H, "Molecular analysis of jejunal, ileal, caecal and recto sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism", J. Med. Microbiol, 54, pp.1093~1101 (2005)
  15. Jeffery IB, "Diet-microbiota interactions and their implications for healthy living", Nutrient, 5, pp.234~252 (2013)
  16. Kabeerdoss J, "Faecal microbiota composition in vegetarians: comparison with omnivores in a cohort of young women in southern India", Br. J. Nutr, 108, pp.953~957 (2012)
  17. Liszt K, "Characterization of bacteria, Clostridia and Bacteroides in feces of vegetarians using qPCR and PCRDGGE fingerprinting", Ann. Nutr. Metab, 54, pp.253~257 (2009)
  18. Mariat D, "The Firmicutes", Bacteroidetes ratio of the human microbiota changes with age, 2009, pp.9, 123~
  19. Matsuda K, "Establishment of an analytical system for the human fecal microbiota, based on reverse transcriptionquantitative PCR targing of multicopy rRNA molecules", Appl. Environ. Microbiol, 75, pp.1961~1969 (2009)
  20. Matsuki T, "Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces", Appl. Environ. Microbiol, 70, pp.7220~7228 (2004)
  21. Maukonen J, "PCR DGGE and RT-PCR DGGE show diversity and short-term temporal stability in the Clostridium cocccoides-Eubacterium rectale group in the human intestinal microbiota", FEMS Microbiol. Ecol, 58, pp.517~528 (2006)
  22. Matijaši B B, "Association of dietary type with fecal microbiota in vegetarians and omnivore in Slovenia", Eur. J. Nutr (2013)[DOI]
  23. Moore W, "Intestinal floras of populations that have a high risk of colon cancer", Appl. Environ. Microbiol, 61, pp.3202~3207 (1995)
  24. Nair P, "Vegetarianism, dietary fibre and gastro-intestinal disease", Digest. Dis, 12, pp.177~185 (1994)
  25. Nam YD, "Comparative analysis of Korean human gut microbiota by pyrosequencing", PLoS ONE, 6, pp.22109~ (2011)
  26. "Prevotella copri DSM 18205 P_copri-1.0.1_Cont7.2, whole genome shotgun sequence"[URL]
  27. O’Sullivan DJ., "Methods for analysis of the intestinal microflora", Curr. Issues Intest. Microbiol, 1, pp.39~50 (2000)
  28. Petti C, "The role of 16S rRNA gene sequencing in identification of microorganisms misidentified by conventional methods", J. Clin. Microbiol, 43, pp.6123~6125 (2005)
  29. Rinttilä T, "Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR", J. Appl. Microbiol, 97, pp.1166~1177 (2004)
  30. Songjinda P, "Molecular monitoring of the developmental bacterial community in the gastrointestinal tract of Japan infants", Biosci. Biotechnol. Biochem, 69, pp.638~641 (2005)
  31. Vanughan EE, "A molecular view of the intestinal ecosystem", Curr. Issues Intest. Microbiol, 1, pp.1~12 (2000)
  32. Wilson M., "Microbial Inhabitant of Humans", pp.2~3 (2005), Cambridge University
  33. Wu GD, "Diet, the human gut microbiota, and IBD", Anaerobe, 24, pp.117~120 (2013)
  34. Wu GD, "Linking long-term dietary patterns with gut microbial enterotypes", Science, 334, pp.105~108 (2011)
  35. Yatsuneko T, "Human gut microbiome viewed across age and geography", Nature, 486, pp.222~227 (2012)
  36. Zimmer J, "A vegan or vegetarian diet substantially alters the human colonic faecal microbiota", Eur. J. Clin. Nutr, 66, pp.53~60 (2012)

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