Revealed the Status of Microbial Diversity and Structure in Soil and Rhizosphere of Endangered Plant Species Cypripedium japonicum
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초록
The Cypripedium japonicum is a species of orchid, distributed mainly in the temperateregions of the Northern Hemisphere. In Korea, C. japonicum is an extremely rare species andclass I endangered plant. However, little is known about the plant-microbe interaction and itsecology, especially rhizosphere bacterial communities in terms of structure and diversity in C. japonicum. In this study, the diversity of bacterial communities was investigated in C. japonicum rhizosphere and bulk soil. Proteobacteria, Acidobacteria and Actinobacteria were themost abundant groups in both rhizosphere and bulk soil. Significantly Proteobacteria andActinobacteria abundantly inhabited in the rhizosphere when compared with the bulk soil. Conversely, significantly more unclassified bacteria were detected in the rhizosphere soil than inthe bulk soil. This work increases our understanding of the rhizosphere bacterial diversity onclass I endangered plant, C. japonicum.
Abstract
The Cypripedium japonicum is a species of orchid, distributed mainly in the temperateregions of the Northern Hemisphere. In Korea, C. japonicum is an extremely rare species andclass I endangered plant. However, little is known about the plant-microbe interaction and itsecology, especially rhizosphere bacterial communities in terms of structure and diversity in C. japonicum. In this study, the diversity of bacterial communities was investigated in C. japonicum rhizosphere and bulk soil. Proteobacteria, Acidobacteria and Actinobacteria were themost abundant groups in both rhizosphere and bulk soil. Significantly Proteobacteria andActinobacteria abundantly inhabited in the rhizosphere when compared with the bulk soil. Conversely, significantly more unclassified bacteria were detected in the rhizosphere soil than inthe bulk soil. This work increases our understanding of the rhizosphere bacterial diversity onclass I endangered plant, C. japonicum.
참고문헌 (29)
- Acosta-Martinez V, "Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use", Soil Biol. Biochem, 40, pp.2762~2770 (2008)
- Berg G, "Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere", FEMS Microbiol. Ecol, 68, pp.1~13 (2009)
- Cash C., "The slipper orchids" (1991), Christopher Helm A & C Black
- Cocking EC., "Endophytic colonisation of plant roots by nitrogen-fixing bacteria", Plant Soil, 252, pp.169~175 (2003)
- Cribb PJ, "Orchid conservation: a global perspective" (2003), Natural History Publication
- Chun J, "The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer", BMC Microbiol, 10, pp.101~ (2010)
- DeAngelis KM, "Selective progressive response of soil microbial community to wild oat roots", ISME J, 3, pp.3~ (2008)
- Dunbar J, "Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning", Appl. Environ. Microbiol, 65, pp.1662~1669 (1999)
- Frey-Klett P, "Ectomycorrhizal symbiosis affects functional diversity of rhizosphere Pseudomonas fluorescen", New Phytol, 165, pp.317~328 (2005)
- Fulthorpe RR, "Distantly sampled soils carry few species in common", ISME J, 2, pp.901~910 (2008)
- Haichar FZ, "Plant host habitat and root exudates shape soil bacterial community structure", ISME J, 2, pp.1221~1230 (2008)
- Molina L, "Survival of Pseudomonas putida KT2440 in soil and in the rhizosphere of plants under greenhouse and environmental conditions", Soil. Biol. Biochem, 32, pp.315~321 (2000)
- Oger PM, "Engineering root exudation of Lotus toward the production of two novel carbon compounds leads to the selection of distinct microbial populations in the rhizosphere", Microb. Ecol, 47, pp.96~103 (2004)
- Panwar J, "AM fungi: A biological approach towards conservation of endangered plants in Thar desert, India", Curr. Sci, 82, pp.576~578 (2002)
- Ranger J, "Input-output nutrient budgets as a diagnostic tool for sustainable forest management", For. Ecol. Manage, 122, pp.139~154 (1999)
- Roesch LF, "Pyrosequencing enumerates and contrasts soil microbial diversity", ISME J, 1, pp.283~290 (2007)
- Sait M, "Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation independent surveys", Environ. Microbiol, 4, pp.654~666 (2002)
- Sanguin H, "Potential of a 16S rRNAbased taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities", Appl. Environ. Microbiol, 72, pp.4302~4312 (2006)
- Sanguin H, "Development of a 16S rRNA microarray approach for the monitoring of rhizosphere Pseudomonas populations associated with the decline of take-all disease of wheat", Soil Biol. Biochem, 40, pp.1028~1039 (2008)
- Schloss PD, "Status of the microbial census", Microbiol. Mol. Biol. Rev, 68, pp.686~691 (2004)
- Shaw LJ, "Perception and modification of plant flavonoid signals by rhizosphere microorganisms", Environ. Microbiol, 8, pp.1867~1880 (2006)
- 심미영, "광릉요강꽃과 복주머니란의 뿌리에 감염된 난균근균의 특성", 한국균학회지, 38(1), pp.1~4 (2010), 한국균학회
- Singh D, "A hump-backed trend in bacterial diversity with elevation on Mount Fuji, Japan", Microb. Ecol, 63, pp.429~437 (2012)
- Smalla K, "Bacterial diversity of soils assessed by DGGE, T-RFLP and SSCP fingerprints of PCR-amplified 16S rRNA gene fragments: do the different methods provide similar results?", J. Microbiol. Methods, 69, pp.470~479 (2007)
- Smith SE, "Mycorrhizal symbiosis" (2008), Academic Press
- Stackebrandt E, "Taxomomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology", Int. J. Syst. Evol. Microbiol, 44, pp.846~849 (1994)
- Uroz S, "Mineral weathering by bacteria: ecology, actors and mechanisms", Trends Microbiol, 17, pp.378~387 (2009)
- Uroz S, "Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil", Environ. Microbiol. Rep, 2, pp.281~288 (2010)
- Yergeau E, "Environmental microarray analyses of Antarctic soil microbial communities", ISME J, 3, pp.340~351 (2009)
