초분광 영상을 이용한 콩 들불병 진단을 위한 주요 파장 선정 및 모델 개발
Development of a Model with Key Wavelengths for Diagnosing Soybean Wildfire Disease Using Hyperspectral Imaging
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초록
이 연구는 초분광 영상으로 두 품종의 콩(청자 3호, 대찬)의 들불병을 진단할 수 있는 모델과 다중분광 영상센서를 개발하기 위해 수행되었다. 무처리구와 들불병 처리구에서 5 nm full width at half maximum (FWHM)으로 구성된 원시 초분광 중심파장들의 콩 식물 영역 반사율들을 추출하여 10 nm FWHM으로 병합한 후, t-test로 차이가 나타난 blue, green, red, red edge, NIR1 및 NIR2 각 영역에서 선정된 대표 밴드로 121개의 식생지수를 계산하였다. 식생지수를 입력변수로 support vector machine (SVM), random forest (RF), extra tree (EXT), extreme gradient boosting (XGB)의 머신러닝 기법과 shapley additive explanation 변수 선택 기법을 적용하여 들불병 진단에 가장 적절한 모델을 선정하고 사용된 식생지수와 파라미터를 나타내었다. T-test 결과 품종에 상관없이 blue 1개(420 nm), green 2개(500, 540 nm), red 1개(600 nm), red edge 2개(680, 700 nm), NIR1 2개(780, 840 nm), NIR2 1개(920 nm)의 총 9개 대표 밴드들이 선택되었고, 성능 평가를 통해 선정된 모델에 청자 3호의 경우 SVM모델(OA=0.86, KC=0.72, 10 VIs)이 선정되었으나 혼동행렬 분석 결과 정상오분류가 적은 RF모델이 선택되었다. RF모델(식 생지수 : RE/Blue, NSI, GDVI, Green/Blue, 파라미터 : max_depth=6, n_estimators=100)은 OA=0.81, KC=0.60, precision=0.86, recall=0.81, F1 score=0.80의 성능을 나타내었다. 대찬은 EXT모델(식생지수 : YVI, RE/Green, 2YVI, 파라미터 : max_depth=8, n_estimators=10)이 선정되 었고, OA=0.86, KC=0.72, precision=0.86, recall=0.86, F1 score=0.86의 성능을 나타내었다.
Abstract
This study was conducted to develop the diagnosis model of wildfire disease for two varieties of soybeans (Cheongja No. 3 and Daechan) based on hyperspectral images and to propose the bandpass filters for a multispectral sensor. The reflectances of the raw hyperspectral center wavelengths, which had a 5 nm full width at half maximum (FWHM), were extracted from the soybean plant canopies and then merged into 10 nm FWHM. To identify differences between the control and infected groups among the merged reflectances (blue, green, red, red edge, NIR1, and NIR2), a t-test was performed with an alpha level of 0.05. Subsequently, the representative bands were identified and applied to calculate 121 vegetation indices. The vegetation indices were utilized as input variables for developing machine learning models, including support vector machine (SVM), random forest (RF), extra tree (EXT), and extreme gradient boosting (XGB). These models were applied to the shaply additive explanation method for feature selection. The most suitable model for wildfiredisease diagnosis was selected by comparing the performance of various models, and the utilized vegetation indices and parameterswere presented in this manuscript. Nine representative bands were selected regardless of the variety: blue (420 nm), green (500 nm,540 nm), red (600 nm), red edge (680 nm, 700 nm), NIR1 (780 nm, 840 nm), and NIR2 (920 nm). As a result of the performanceevaluation, for Cheonja 3-ho 3, Even if the SVM model (OA: 0.86, KC: 0.72, 10 VIs) was better than the RF model, The RF modelwas selected because of the true negative problem on confusion matrix especially for disease diagnosis. The RF model (vegetation indices:RE/Blue, NSI, GDVI, Green/Blue, parameters: max_depth=6, n_estimators=100) exhibited performance with OA=0.81, KC=0.60,Precision=0.86, Recall=0.81 and F1 score=0.80. For Daechan, the EXT model (vegetation indices: YVI, RE/Green, 2YVI, parameters:max_depth=8, n_estimators=10) was selected, and the performance was OA=0.86, KC=0.72, Precision=0.86, Recall=0.86, and F1 score=0.86.
참고문헌 (43)
- Agrios GN, "Plant pathology" (2005), Elsevier
- Al Daoud E, "Comparison between XGBoost, LightGBM and CatBoost using a home credit dataset", International J. of Computer and Information Engineering, 13(1), pp.6~10 (2019)
- Bajwa SG, "Soybean disease monitoring with leaf reflectance", Remote Sensing, 9(2), pp.127~ (2017)
- Bannari A, "A review of vegetation indices", Remote Sens. Rev, 13, pp.95~120 (1995)
- Breiman L, "Random forests", Mach. Learn, 45, pp.5~32 (2001)
- Calamita F, "Early identification of root rot disease by using hyperspectral reflectance: The case of pathosystem grapevine", armillaria, 2021, pp.13(13), 2436~
- Geurts P, "Extremely randomized trees", Mach Learn, 63, pp.3~42 (2006)
- Gitelson AA, "Use of a green channel in remote sensing of global vegetation from EOS-MODIS", Remote sensing of Environment, 58(3), pp.289~298 (1996)
- Gitelson AA, "Three-band model for noninvasive estimation of chlorophyll, carotenoids, and anthocyanin contents in higher plant leaves", Geophys. Res. Lett, 33, pp.L11402~ (2006)
- Hancock DW, "Relationships between blue-and red-based vegetation indices and leaf area and yield of alfalfa", Crop Science, 47(6), pp.2547~2556 (2007)
- Hartman GL, "Soybean Disease Compendium", pp.37~39 (1999), Agricultural Research Service
- Hartman GL, "Crops that feed the World 2. Soybean-worldwide production, use, and constraints caused by pathogens and pests", Food Security, 3, pp.5~17 (2011)
- Huete A, "Overview of the radiometric and biophysical performance of the MODIS vegetation indices", Remote Sensing of Environment, 83(1-2), pp.195~213 (2002)
- Jinendra B, "Near infrared spectroscopy and aquaphotomics : Novel approach for rapid in vivo diagnosis of virus infected soybean", Biochem. Biophys. Res. Commun, 397, pp.685~690 (2010)
- Jordan CF, "Derivation of leaf-area index from quality of light on the forest floor", Ecology, 50(4), pp.663~666 (1969)
- 강인정, "2014- 2015년 국내 콩 들불병 발생 상황", 식물병 연구, 22(1), pp.38~43 (2016), 한국식물병리학회
- 강경석, "초분광 영상을 이용한 의사결정 트리 기반 봄감자(Solanum tuberosum)의 염해 판별", 한국농림기상학회지, 21(4), pp.317~326 (2019), 한국농림기상학회
- 강예성, "Spectral Band Selection for Detecting Fire Blight Disease in Pear Trees by Narrowband Hyperspectral Imagery", 한국농림기상학회지, 23(1), pp.15~33 (2021), 한국농림기상학회
- Kauth RJ, "The tasselled cap--a graphic description of the spectral-temporal development of agricultural crops as seen by landsat", LARS Symposium, pp.159~ (1976)
- Kofi I, "Detection of plant leaf disease employing image processing and Gaussian smoothing approach", Int. J. Comput. Appl, 162, pp.20~25 (2017)
- Landis JR, "The measurement of observer agreement for categorical data", Biometrics, 33, pp.159~174 (1977)
- Lay L, "Evaluation of soybean wildfire prediction via hyperspectral imaging", Plants, 12(4), pp.901~ (2023)
- Li N, "Classification of pine wilt disease at different infection stages by diagnostic hyperspectral bands", Ecological Indicators, 142, pp.109198~ (2022)
- Lu J, "Detection of multi-tomato leaf diseases(late blight, target and bacterial spots)in different stages by using a spectral-based sensor", Scientific Reports, 8(1), pp.2793~ (2018)
- Mahlein AK, "Plant disease detection by hyperspectral imaging: From the lab to the field", Advances in Animal Biosciences, 8(2), pp.238~243 (2017)
- Mahlein AK, "Development of spectral indices for detecting and identifying plant diseases", Remote Sensing of Environment, 128, pp.21~30 (2013)
- Marcílio WE, "November, from explanations to feature selection: Assessing SHAP values as feature selection mechanism", 33rd SIBGRAPI Conference on Graphics, Patterns and Images (SIBGRAPI), pp.340~347 (2020), IEEE
- Ministry of Agriculture, Food and Rural Affairs of Korea(MAFRA), "농림축산식품 주요통계. 11-1543000-000128-10", 331~332 (2022)
- Myung IS, "Wildfire of soybean caused by Pseudomonas syringae pv. tabaci, a new disease in Korea", Plant Disease, 93(11), pp.1214~1214 (2009)
- Nagasubramanian K, "Hyperspectral band selection using genetic algorithm and support vector machines for early identification of charcoal rot disease in soybean stems", Plant Methods, 14, pp.1~13 (2018)
- 이영섭, "데이터 마이닝에서 배깅, 부스팅, SVM 분류 알고리즘의 비교 분석", 응용통계연구, 18(2), pp.343~354 (2005), 한국통계학회
- Pal M, "Feature selection for classification of hyperspectral data by SVM", IEEE Trans. Geosci. Remote Sens, 48, pp.2297~2307 (2010)
- Pearson RL, "Remote spectral measurements as a method for determining plant cover", U.S. International Biological Program, ~ (1972)
- Peñuelas J, "The reflectance at the 950-970 nm region as an indicator of plant water status", Int. J. Remote Sens, 14, pp.1887~1905 (1993)
- Praveena M, "A literature review on supervised machine learning algorithms and boosting process", International J. of Computer Applications, 169(8), pp.32~35 (2017)
- Purcell LC, "Arkansas Soybean Production Hand book 197", pp.1~8 (2014)
- Schaad NW, "Pseudomonas syringae pathovars and related pathogens-identification, epidemiology and genomics", pp.369~ (2008), Epidemiology and Genomics
- Shuaibu M, "Unsupervised hyperspectral band selection for apple Marssonina blotch detection", Computers and Electronics in Agriculture, 148, pp.45~53 (2018)
- Sripada RP, "Aerial color infrared photography for determining early in-season nitrogen requirements in corn", Agronomy J, 98(4), pp.968~977 (2006)
- Vincini M, "A broad-band leaf chlorophyll vegetation index at the canopy scale", Precis. Agric, 9, pp.303~319 (2008)
- Wang X, "Automatic detection of rice disease using near infrared spectra technologies", J. Indian Soc. Remote Sens, 45, pp.785~794 (2017)
- Widodo A, "Support vector machine in machine condition monitoring and fault diagnosis", Mech. Syst. Signal Process, 21, pp.2560~2574 (2007)
- Yang C, "Airborne hyperspectral imagery and yield monitor data for mapping cotton yield variability", Precis. Agric, 5, pp.445~461 (2004)
