표적화 차세대염기서열분석법을 이용한 인수공통 바이러스의 유전체 역학과 예찰

키워드

참고문헌 (56)

1. Aasdev A, "First complete genome characterization of duck plaque virus from India", Virusdisease, 32, pp.789~796 (2021)
2. Akshay A, "Predicting Epitope Candidates for SARS-CoV-2", Viruses, 14, pp.1837~ (2022)
3. Anderson KG, "Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus", Cell, 162, pp.738~750 (2015)
4. Ardhaoui M, "Nested PCR followed by NGS : Validation and application for HPV genotyping of Tunisian cervical samples", PLoS One, 16, pp.e0255914~ (2021)
5. Ashma S, "Ebola virus : An emerging sexually transmissible infection pathogen", Indian J Sex Transm Dis AIDS, 39, pp.65~67 (2018)
6. Ayal BG, "Genomic determinants of pathogenicity in SARS-CoV-2 and other human coronaviruses", Proc Natl Acad Sci U S A, 117, pp.15193~15199 (2020)
7. Barzon L, "Applications of next-generation sequencing technologies to diagnostic virology", Int J Mol Sci, 12, pp.7861~7884 (2011)
8. Batovska J, "Effective mosquito and arbovirus surveillance using metabarcoding", Mol Ecol Resour, 18, pp.32~40 (2018)
9. Bo LL, "Foot-and-mouth disease outbreaks due to an exotic serotype Asia 1 virus in Myanmar in 2017", Transbound Emerg Dis, 66, pp.1067~1072 (2019)
10. Brunker K, "Rapid in-country sequencing of whole virus genomes to inform rabies eliminaiton programmes", Wellcome Open Res, 5, pp.1~30 (2020)
11. Chen X, "Next-Generation Sequencing Reveals the Progression of COVID-19", Front Cell Infect Microbiol, 11, pp.632490~ (2021)
12. Chen YC, "Effects of GC bias in next-generation-sequencing data on de novo genome assembly", PLoS One, 8, pp.e62856~ (2013)
13. Cho S, "Urinary genome detection and tracking of Hantaan virus from hemorrhagic fever with renal syndrome patients using multiplex PCR-based next-generation sequencing", PLoS Negl Trop Dis, 15, pp.e0009707~ (2021)
14. Cho YK, "Sequence Length of HIV-1 Subtype B Increases over Time : Analysis of a Cohort of Patients with Hemophilia over 30 Years", Viruses, 13, pp.806~ (2021)
15. Dong Z, "Somatic mutation profiling and HER2 status in KRAS-positive Chinese colorectal cancer patients", Sci Rep, 9, pp.16894~ (2019)
16. Eltom KH, "Differentiation of Capripox Viruses by Nanopore Sequencing", Vaccines(Basel), 9, pp.351~361 (2021)
17. François S, "Real-time SARS-CoV-2 diagnostic and variants tracking over multiple candidates using nanopore DNA sequencing", Sci Rep, 11, pp.15869~ (2021)
18. Garcia-Hernandez ME, "Molecular Detection and Characterization of Porcine Epidemic Diarrhea Virus and Porcine Aichivirus C Coinfection in México", Viruses, 13, pp.738~749 (2021)
19. Grubaugh ND, "Genomic epidemiology reveals multiple introductions of Zika virus into the United States", Nature, 546, pp.401~405 (2017)
20. Hakizimana JN, "Complete genome analysis of African swine fever virus responsible for outbreaks in domestic pigs in 2018 in Burundi and 2019 in Malawi", Trop Anim Health Prod, 53, pp.438~447 (2021)
21. Hess JF, "Library Preparation for Next generation Sequencing : A Review of Automation Strategies", Biotechnol Adv, 41, pp.107537~110750 (2020)
22. Hobbs EC, "The potential of diagnostic point-of-care tests(POCTs)for infectious and zoonotic animal diseases in developing countries : Technical, regulatory and sociocultural considerations", Transbound Emerg Dis, 68, pp.1835~1849 (2021)
23. Jain M, "MinION Analysis and Reference Consortium : Phase 2 data release and analysis of R9. 0 chemistry", F1000Res, 6, pp.760~778 (2017)
24. Jothikumar N, "Development and evaluation of a ligation-free sequence-independent, single-primer amplification(LF-SISPA)assay for whole genome characterization of viruses", J Virol Methods, 299, pp.114346~ (2022)
25. Khan S, "Novel coronavirus : how the things are in Wuhan", Clin Microbiol Infect, 26, pp.399~400 (2020)
26. Kim HR, "Genetic Diversity of Fowlpox Virus and Putative Genes Involved in Its Pathogenicity", Microbiol Spectr, 10, pp.e0141522~ (2022)
27. Jeong-Min Kim, "Identification of Coronavirus Isolated from a Patient in Korea with COVID-19", Osong Public Health and Research Perspectives, 11(1), pp.3~7 (2020), 질병관리청[DOI]
28. Kim WK, "Active Targeted Surveillance to Identify Sites of Emergence of Hantavirus", Clin Infect Dis, 70, pp.464~473 (2020)
29. Kozarewa I, "Overview of target enrichment strategies", Curr Protoc Mol Biol, 112, pp.721~723 (2015)
30. Lee GY, "Genotyping and Molecular Diagnosis of Hepatitis A Virus in Human Clinical Samples Using Multiplex PCR-Based Next-Generation Sequencing", Microorganisms, 10, pp.100~ (2022)
31. Lee JY, "Whole-genome sequencing and genetic diversity of severe fever with thrombocytopenia syndrome virus using multiplex PCR-based nanopore sequencing, Republic of Korea", PLoS Negl Trop Dis, 16, pp.e0010763~ (2022)
32. Lee SH, "Discovery and Genetic Characterization of Novel Paramyxoviruses Related to the Genus Henipavirus in Crocidura Species in the Republic of Korea", Viruses, 13, pp.2020~2035 (2021)
33. Leomar Y. B, "Advances in clinical next-generation sequencing : target enrichment and sequencing technologies", Expert Review of Molecular Diagnostics, 16, pp.3~ (2016)
34. Li Q, "Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus-Infected Pneumonia", N Engl J Med, 382, pp.1199~1207 (2020)
35. Logsdon GA, "Long-read human genome sequencing and its applications", Nat Rev Genet, 21, pp.597~614 (2020)
36. Mardis ER, "Next-generation sequencing platforms", Annu Rev Anal Chem(Palo Alto Calif), 6, pp.287~303 (2013)
37. Mate SE, "Molecular Evidence of Sexual Transmission of Ebola Virus", N Engl J Med, 373, pp.2448~2454 (2015)
38. McCombie WR, "Next-Generation Sequencing Technologies", Cold Spring Harb Perspect Med, 9, pp.a036798~ (2019)
39. Monika KK, "Genomic Analysis of SARS-CoV-2 Alpha, Beta and Delta Variants of Concern Uncovers Signatures of Neutral and Non-Neutral Evolution", Viruses, 14, pp.2375~ (2022)
40. Moore JP, "SARS-CoV-2 Vaccines and the Growing Threat of Viral Variants", JAMA, 325, pp.821~822 (2021)
41. Paraskevis D, "Full-genome evolutionary analysis of the novel corona virus(2019-nCoV)rejects the hypothesis of emergence as a result of a recent recombination event", Infect Genet Evol, 79, pp.104212~104215 (2020)
42. Qiqi Y, "Assessing the role of live poultry trade in community-structured transmission of avian influenza in China", Proc Natl Acad Sci U S A, 117, pp.5949~5954 (2020)
43. Quail MA, "A tale of three next generation sequencing platforms : comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers", BMC Genomics, 13, pp.341~353 (2012)
44. Quick J, "Real-time, portable genome sequencing for Ebola surveillance", Nature, 530, pp.228~232 (2016)
45. Rui S, "A combination vaccine against SARS-CoV-2 and H1N1 influenza based on receptor binding domain trimerized by six-helix bundle fusion core", EbioMedicine, 85, pp.104297~ (2022)
46. Sanger F, "A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase", J Mol Biol, 94, pp.441~448 (1975)
47. Song DH, "Sequence-Independent, Single-Primer Amplification Next-Generation Sequencing of Hantaan Virus Cell Culture-Based Isolates", Am J Trop Med Hyg, 96, pp.389~394 (2017)
48. Shilpa C, "Whole-genome analysis and mutation pattern of SARS-CoV-2 during first and second wave outbreak in Gwangju, Republic of Korea", Sci. Rep, 12, pp.11354~ (2022)
49. van Dijk EL, "The Third Revolution in Sequencing Technology", Trends Genet, 34, pp.666~681 (2018)
50. Wang Y, "Nanopore sequencing technology, bioinformatics and applications", Nat Biotechnol, 39, pp.1348~1365 (2021)
51. Yang Q, "Assessing the role of live poultry trade in community-structured transmission of avian influenza in China", Proc Natl Acad Sci U S A, 117, pp.5949~5954 (2020)
52. Zaki AM, "Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia", N Engl J Med, 367, pp.1814~1820 (2012)
53. Zhang XA, "A Zoonotic Henipavirus in Febrile Patients in China", N Engl J Med, 387, pp.470~472 (2022)
54. Zhong NS, "Epidemiology and cause of severe acute respiratory syndrome(SARS)in Guangdong, People’s Republic of China, in February, 2003", Lancet, 362, pp.1353~1358 (2003)
55. Zhou X, "Emergence of African Swine Fever in China, 2018", Transbound Emerg Dis, 65, pp.1482~1484 (2018)
56. Zhu J, "Prevalence of bovine astroviruses and their genotypes in sampled Chinese calves with and without diarrhoea", J Gen Virol, 102, pp.001640~ (2021)

관련 논문AI추천