NMR Study on Binding Interactions of Cationic Porphyrin Derivatives with double helical d(CGCGAATTCGCG)2

Abstract

Binding interactions of cationic porphyrins, T4MPyP and TMAP with DNA oligomer d(CGCGAATTCGCG)2 were studied with NMR spectroscopy, UV and CD spectroscopic method. Two porphyrins showed significant differences in NMR, UV and CD data upon binding to DNA. T4MPyP was considered to position more closely to DNA bases through partial intercalation as well as ionic intercalation between the positive charges of porphyrin and phosphate group of DNA at 5’-GC-3’ steps. Contrast to this, TMAP was thought to bind to phosphate of DNA more or less outside of the groove.