신육종 기술 및 작물 개발 동향
Current Status of New Plant Breeding Technologies and Crop Development
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In recent years, new plant breeding technologies (NPBT) have had enormous effects on breeding and the agricultural industry. In particular, genome editing technology, including site-directed nuclease technologies, has progressed dramatically since the first-generation Zinc finger nucleases to the third-generation clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9 (CRISPR/Cas9). CRISPR/Cas9 technology has yielded a revolutionary breakthrough in the accurate, efficient, and user-friendly genome editing of eukaryotes. Several methods for basic research and applications, such as knock-out, base editing, gene targeting, and transcriptional activation or repression have been derived from CRISPR/Cas9 technology. Herein, we will describe the current progress in NPBTs and also summarize the crops developed by NPBTs. After analyzing the current status of NPBTs and crop development, we have proposed potential strategies for crop development using NPBTs.
Abstract
In recent years, new plant breeding technologies (NPBT) have had enormous effects on breeding and the agricultural industry. In particular, genome editing technology, including site-directed nuclease technologies, has progressed dramatically since the first-generation Zinc finger nucleases to the third-generation clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9 (CRISPR/Cas9). CRISPR/Cas9 technology has yielded a revolutionary breakthrough in the accurate, efficient, and user-friendly genome editing of eukaryotes. Several methods for basic research and applications, such as knock-out, base editing, gene targeting, and transcriptional activation or repression have been derived from CRISPR/Cas9 technology. Herein, we will describe the current progress in NPBTs and also summarize the crops developed by NPBTs. After analyzing the current status of NPBTs and crop development, we have proposed potential strategies for crop development using NPBTs.
참고문헌 (103)
- Abe K, "Production of high oleic", low linoleic rice by genome editing, 2018, pp.18, 30191~30198
- Abudayyeh OO, "RNA targeting with CRISPR-Cas13", Nature, 550, pp.280~284 (2017)
- Aman R, "RNA virus interference via CRISPR", Cas13a system in plants, 2018, pp.19, 1~
- Baek K, "DNA-free two-gene knockout in chlamydomonas reinhardtii via CRISPR-Cas9 ribonucleoproteins", Sci Rep, 6, pp.30620~ (2016)
- Barrangou R, "CRISPR provides acquired resistance against viruses in prokaryotes", Science, 315, pp.1709~1712 (2007)
- Beetham PR, "A tool for functional plant genomics : Chimeric RNA", DNA oligonucleotides cause in vivo gene-specific mutations, 1999, pp.96, 8774~8778
- Belhaj K, "Editing plant genomes with CRISPR", Cas9, 2015, pp.32, 76~84
- Boch J, "Breaking the code of DNA binding specificity of TAL-type III effectors", Science, 326, pp.1509~1512 (2009)
- Bogdanove AJ, "TAL effectors : Finding plant genes for disease and defense", Curr Opin Plant Biol, 13, pp.394~401 (2010)
- Braatz J, "CRISPR-Cas9 targeted mutagenesis leads to simultaneous modification of different homoeologous gene copies in polyploid oilseed rape(Brassica napus)", Plant Physiol, 174, pp.935~942 (2017)
- Carroll D, "Genome engineering with targetable nucleases", Annu Rev Biochem, 83, pp.409~439 (2014)
- Cermak T, "A Multipurpose toolkit to enable advanced genome engineering in plants", Plant Cell, 29, pp.1196~1217 (2017)
- Chandrasekaran J, "Development of broad virus resistance in non-transgenic cucumber using CRISPR", Cas9 technology, 2016, pp.17, 1140~1153
- Char SN, "An agrobacterium-delivered CRISPR", Cas9system for high-frequency targeted mutagenesis in maize, 2017, pp.15, 257~268
- Chen K, "Targeted genome modification technologies and their applications in crop improvements", Plant Cell Rep, 33, pp.575~583 (2014)
- Christian M, "Targeting DNA double-strand breaks with TAL effector nucleases", Genetics, 186, pp.757~761 (2010)
- Cong L, "Multiplex genome engineering using CRISPR", Cas systems, 2013, pp.339, 819~823
- Deng L, "Efficient generation of pink-fruited tomatoes using CRISPR", Cas9 system, 2018, pp.45, 51~54
- Devi EL, "Cisgenesis and Intragenesis : Twin sisters for crop improvement", Res J Agric Fores Sci, 1, pp.22~26 (2013)
- Gaj T, "ZFN, TALEN, and CRISPR", Cas-based methods for genome engineering, 2013, pp.31, 397~405
- Gao L, "Engineered cpf1 variants with altered PAM specificities", Nat Biotechnol, 35, pp.789~792 (2017)
- Gao Y, "Self-processing of ribozyme-flanked RNAs into guide RNAs in vitro and in vivo for CRISPRmediated genome editing", J Intgr Plant Biol, 56, pp.343~349 (2014)
- Gaudelli NM, "Programmable base editing of A⋅T to G⋅C in genomic DNA without DNA cleavage", Nature, 551, pp.464~471 (2017)
- Guan Y, "Development and application of marker-assisted reverse breeding using hybrid maize germplasm", J Intgr Agric, 14, pp.2538~2546 (2015)
- Hanania U, "Establishment of a tobacco BY2 cell line devoid of plant specific xylose and fucose as a platform for the production of biotherapeutic proteins", Plant Biotechnol J, 15, pp.1120~1129 (2017)
- Hanin M, "Plant genome modification by homologous recombination", Curr Opin Plant Biol, 6, pp.157~162 (2003)
- Hilton IB, "Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers", Nat Biotechnol, 33, pp.510~517 (2015)
- Hu B, "Variation in NRT1. 1B contributes to nitrate-use divergence between rice subspecies", Nat Genet, 47, pp.834~838 (2015)
- Hua K, "Precise A⋅T to G⋅C base editing in the rice genome", Mol Plant, 11, pp.627~630 (2018)
- Huang X, "Genome-wide association studies of 14 agronomic traits in rice landraces", Nat Genet, 42, pp.961~967 (2010)
- Hur JK, "Targeted mutagenesis in mice by electroporation of Cpf1 ribonucleoproteins", Nat Biotechnol, 34, pp.807~808 (2016)
- ISAAA, "Global status of commercialized biotech", GM crops in 2017: Biotech crop adoption surges as economic benefits accumulate in 22 years, 2017, pp.53~
- Ishino Y, "Nucleotide sequence of the IAP gene, responsible for alkaline phosphatase isozyme conversion in escherichia coli, and identification of the gene product", J Bacteriol, 169, pp.5429~5433 (1987)
- Jansen R, "Identification of genes that are associated with DNA repeats in prokaryotes", Mol Microbiol, 43, pp.1565~1575 (2002)
- Jia H, "Genome editing of the disease susceptibility gene CsLOB1 in citrus confers resistance to citrus canker", Plant Biotechnol J, 15, pp.817~823 (2017)
- Jiang WZ, "Significant enhancement of fatty acid composition in seeds of the allohexaploid, Camelina sativa, using CRISPR", Cas9 gene editing, 2017, pp.15, 648~657
- Jinek M, "A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity", Science, 337, pp.816~821 (2012)
- Joung JK, "TALENs : A widely applicable technology for targeted genome editing", Nat Rev Mol Cell Biol, 14, pp.49~55 (2013)
- Kearns NA, "Functional annotation of native enhancers with a Cas9-histone demethylase fusion", Nat Methods, 12, pp.401~403 (2015)
- CRISPR, "Cas9 gene editing", Kim EJ., 2017
- Kim HK, "In vivo high-throughput profiling of CRISPR-Cpf1 activity", Nat Methods, 14, pp.153~159 (2017)
- Kim Y, "Generation of knockout mice by Cpf1-mediated gene targeting", Nat Biotechnol, 34, pp.808~810 (2016)
- Kim YG, "Hybrid restriction enzymes : Zinc finger fusions to Fok I cleavage domain", Proc Natl Acad Sci USA, 93, pp.1156~1160 (1996)
- Komor AC, "Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage", Nature, 533, pp.420~424 (2016)
- Komor AC, "Improved base excision repair inhibition and bacteriophage Mu Gam protein yields C:G-to-T:A base editors with higher efficiency and product purity", Sci Adv, 3 (2017)
- Laity JH, "Zinc finger proteins : New insights into structural and functional diversity", Curr Opin Struc Bio, 11, pp.39~46 (2001)
- Ledford H, "CRISPR, the disruptor", Nature, 522, pp.20~24 (2015)
- 이신우, "유전자편집 작물의 개발 현황 및 농업생명공학기술의 국가 경쟁력 강화", Journal of Plant Biotechnology, 45(3), pp.155~170 (2018), 한국식물생명공학회
- Li C, "Expanded base editing in rice and wheat using a Cas9-adenosine deaminase fusion", Genome Biol, 19, pp.59~ (2018)
- Li R, "Multiplexed CRISPR", Cas9-mediated metabolic engineering of γ-aminobutyric acid levels in solum lycopersicum, 2018, pp.16, 415~427
- Li T, "High-efficiency TALEN-based gene editing produces diseaseresistant rice", Nat Biotechnol, 30, pp.390~392 (2012)
- Li X, "Lycopene is enriched in tomato fruit by CRISPR", Cas9-mediated multiplex genome editing, 2018, pp.9, 559~571
- Lowder LG, "A CRISPR", Cas9toolbox for multiplexed plant genome editing and transcriptional regulation, 2015, pp.169, 971~985
- Lu Y, "Precise editing of a target base in the rice genome using a modified CRISPR", Cas9 system, 2017, pp.10, 523~525
- New plant breeding techniques: State-of-the-art and prospects for commercial development, "Lusser M", European Commission, 4~23, pp.JRC Reference Reports: EUR 24760 EN (2011)
- Ma X, "A Robust CRISPR", Cas9 system for convenient, high-efficiency multiplex genome editing in monocot and dicot Plants, 2015, pp.8, 1274~1284
- Macovei A, "Novel alleles of rice eIF4G generated by CRISPR", Cas9-targeted mutagenesis confer resistance to rice tungro spherical virus, 2018, pp.16, 1918~1927
- Miao C, "Mutations in a subfamily of abscisic acid receptor genes promote rice growth and productivity", Proc Natl Acad Sci USA, 115, pp.6058~6063 (2018)
- Miller J, "Repetitive zincbinding domains in the protein transcription factor IIIA from xenopus oocytes", EMBO J, 4, pp.1609~1614 (1985)
- Mojica FJ, "Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements", J Mol Evol, 60, pp.174~182 (2005)
- Mojica FJ, "Long stretches of short tandem repeats are present in the largest replicons of the archaea haloferax mediterranei and haloferax volcanii and could be involved in replicon partitioning", Mol Microbiol, 17, pp.85~93 (1995)
- Moscou MJ, "A simple cipher governs DNA recognition by TAL effectors", Science, 326, pp.1501~ (2009)
- Okuzaki A, "CRISPR", Cas9-mediated genome editing of the fatty acid desaturase 2 gene in brassica napus, 2018, pp.131, 63~69
- Osakabe Y, "Optimization of CRISPR", Cas9genome editing to modify abiotic stress responses in plants, 2016, pp.6, 26685~
- Pabo CO, "Design and selection of novel Cys2His2 zinc finger proteins", Annu Rev Biochem, 70, pp.313~340 (2001)
- Pan CC, "CRISPR", Cas9-mediated efficient and heritable targeted mutagenesis in tomato plants in the first and later generations, 2016, pp.6, 247~255
- Park SM, "Transgenic watermelon rootstock resistant to CGMMV(cucumber green mottle mosaic virus)infection", Plant Cell Rep, 24, pp.350~356 (2005)
- Peng A, "Engineering canker-resistant plants through CRISPR", Cas9-targeted editing of the susceptibility gene CsLOB1promoter in citrus, 2017, pp.15, 1509~1519
- Perez-Pinera P, "RNA-guided gene activation by CRISPR-Cas9-based transcription factors", Nat Methods, 10, pp.973~976 (2013)
- Evolution of the seed market between 1999 and 2017, "Phillips McDougall P", Phillips McDougall’s Seed Service, ~ (2017)
- Piatek A, "RNA-guided transcriptional regulation in planta via synthetic dCas9-based transcription factors", Plant Biotechnol J, 13, pp.578~589 (2015)
- Podevin N, "Site-directed nucleases : A paradigm shift in predictable, knowledge-based plant breeding", Trends Biotechnol, 31, pp.375~383 (2013)
- Qi LS, "Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression", Cell, 152, pp.1173~1183 (2013)
- Ran FA, "In vivo genome editing using staphylococcus aureus Cas9", Nature, 520, pp.186~191 (2015)
- Ren B, "A CRISPR", Cas9 toolkit for efficient targeted base editing to induce genetic variations in rice, 2017, pp.60, 516~519
- Römer P, "Plant pathogen recognition mediated by promoter activation of the pepper Bs3 resistance gene", Science, 318, pp.645~648 (2007)
- Rouet P, "Introduction of double-strand breaks into the genome of mouse cells by expression of a rare-cutting endonuclease", Mol Cell Bio, 14, pp.8096~8106 (1994)
- Sánchez-León S, "Low-gluten, nontransgenic wheat engineered with CRISPR", Cas9, 2018, pp.16, 902~910
- Sander JD, "CRISPR-Cas systems for editing, regulating and targeting genomes", Nat Biotechnol, 32, pp.347~355 (2014)
- Sauer NJ, "Oligonucleotide-mediated genome editing provides precision and function to engineered nucleases and antibiotics in plants", Plant Physiol, 170, pp.1917~1928 (2016)
- Schindele P, "Transforming plant biology and breeding with CRISPR", Cas9, Cas12 and Cas13, 2018, pp.592, 1954~1967
- Shi J, "ARGOS8 variants generated by CRISPR-Cas9 improve maize grain yield under field drought stress conditions", Plant Biotechnol J, 15, pp.207~216 (2017)
- Shibuya K, "CRISPR", Cas9-mediated mutagenesis of the EPHEMERAL1 locus that regulates petal senescence in Japanese morning glory, 2018, pp.131, 53~57
- Shimatani Z, "Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion", Nat Biotechnol, 35, pp.441~443 (2017)
- Shmakov S, "Discovery and functional characterization of diverse class 2 CRISPR-Cas systems", Mol Cell, 60, pp.385~397 (2015)
- Soyk S, "Bypassing negative epistasis on yield in tomato imposed by a domestication gene", Cell, 169, pp.1142~1155 (2017)
- Soyk S, "Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato", Nat Genet, 49, pp.162~170 (2017)
- Sun YW, "Generation of high-amylose rice through CRISPR", Cas9-mediated targeted mutagenesis of starch branching enzymes, 2017, pp.8, 298~313
- Tang X, "A CRISPR-Cpf1 system for efficient genome editing and transcriptional repression in plants", Nat Plants, 3, pp.17103~ (2017)
- Valton J, "Overcoming transcription activator-like effector(TALE)DNA binding domain sensitivity to cytosine methylation", J Biol Chem, 287, pp.38427~38432 (2012)
- Wang F, "Enhanced rice blast resistance by CRISPR", Cas9-targeted mutagenesis of the ERF transcription factor gene OsERF922, 2016, pp.11, e0154027~
- Wang M, "Multiplex gene editing in rice with simplified CRISPR-Cpf1and CRISPR-Cas9 systems", J Integr Plant Biol, 60, pp.626~631 (2018)
- Watanabe K, "CRISPR", Cas9-mediated mutagenesis of the dihydroflavonol-4-reductase-B(DFR-B)locus in the Japanese morning glory Ipomoea(Pharbitis)nil, 2017, pp.7, 10028~10037
- Wijnker E, "Reverse breeding in arabidopsis thaliana generates homozygous paprental lines from a heterozygous plant", Nat Genet, 44, pp.467~471 (2012)
- Wood AJ, "Targeted genome editing across species using ZFNs and TALENs", Science, 333, pp.307~ (2011)
- Xie K, "Boosting CRISPR", Cas9 multiplex editing capability with the endogenous tRNAprocessing system, 2015, pp.112, 3570~3575
- Xu R, "Gene targeting using the agrobacterium tumefaciens mediated CRISPR-Cas system in rice", Rice, 7, pp.5~ (2014)
- Yamano T, "Crystal structure of Cpf1 in complex with guide RNA and target DNA", Cell, 165, pp.949~962 (2016)
- Zetsche B, "Cpf1 is a single RNA-guided 624 endonuclease of a class 2 CRISPR-Cas system", Cell, 163, pp.759~771 (2015)
- Zetsche B, "Multiplex gene editing by CRISPR-Cpf1 using a single crRNA array", Nat Biotechnol, 35, pp.31~34 (2017)
- Zhang Y, "Simultaneous modification of three homologs of TaEDR1 by genome editing enhances powdery mildew resistance in wheat", Plant J, 91, pp.714~724 (2017)
- Zhou H, "Development of commercial thermosensitive genic male sterile rice accelerates hybrid rice breeding using the CRISPR", Cas9-mediated TMS5 editing system, 2016, pp.6, 37395~
- Zong Y, "Precise base editing in rice, wheat and maize with a Cas9-cytidine deaminase fusion", Nat Biotechnol, 35, pp.438~440 (2017)
