Role of UPF1 in lncRNA-HEIH regulation for hepatocellular carcinoma therapy
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UPF1, a novel posttranscriptional regulator, regulates the abundance of transcripts, including long noncoding RNAs (lncRNAs), and thus plays an important role in cell homeostasis. In this study, we revealed that UPF1 regulates the abundance of hepatocellular carcinoma upregulated EZH2-associated lncRNA (lncRNA-HEIH) by binding the CG-rich motif, thereby regulating hepatocellular carcinoma (HCC) tumorigenesis. UPF1-bound lncRNA-HEIH was susceptible to degradation mediated by UPF1 phosphorylation via SMG1 and SMG5. According to analysis of RNA-seq and public data on patients with liver cancer, the expression of lncRNA-HEIH increased the levels of miR-194-5p targets and was inversely correlated with miR-194-5p expression in HCC patients. Furthermore, UPF1 depletion upregulated lncRNA-HEIH, which acts as a decoy of miR-194-5p that targets GNA13, thereby promoting GNA13 expression and HCC proliferation. The UPF1/lncRNA-HEIH/miR-194-5p/GNA13 regulatory axis is suggested to play a crucial role in cell progression and may be a suitable target for HCC therapy.
Abstract
UPF1, a novel posttranscriptional regulator, regulates the abundance of transcripts, including long noncoding RNAs (lncRNAs), and thus plays an important role in cell homeostasis. In this study, we revealed that UPF1 regulates the abundance of hepatocellular carcinoma upregulated EZH2-associated lncRNA (lncRNA-HEIH) by binding the CG-rich motif, thereby regulating hepatocellular carcinoma (HCC) tumorigenesis. UPF1-bound lncRNA-HEIH was susceptible to degradation mediated by UPF1 phosphorylation via SMG1 and SMG5. According to analysis of RNA-seq and public data on patients with liver cancer, the expression of lncRNA-HEIH increased the levels of miR-194-5p targets and was inversely correlated with miR-194-5p expression in HCC patients. Furthermore, UPF1 depletion upregulated lncRNA-HEIH, which acts as a decoy of miR-194-5p that targets GNA13, thereby promoting GNA13 expression and HCC proliferation. The UPF1/lncRNA-HEIH/miR-194-5p/GNA13 regulatory axis is suggested to play a crucial role in cell progression and may be a suitable target for HCC therapy.
참고문헌 (50)
- Llovet, J. M., "Hepatocellular carcinoma", Nat. Rev. Dis. Primers, 7, pp.6~ (2021)
- Huang, M. D., "Long non-coding RNA TUG1 is up-regulated in hepatocellular carcinoma and promotes cell growth and apoptosis by epigenetically silencing of KLF2", Mol. Cancer, 14, pp.165~ (2015)
- Pang, Y., "Peptide SMIM30 promotes HCC development by inducing SRC", YES1 membrane anchoring and MAPK pathway activation, 2020, pp.73, 1155~1169
- Li, Z., "The LINC01138 drives malignancies via activating arginine methyl transferase 5 in hepatocellular carcinoma", Nat. Commun, 9, pp.1572~ (2018)
- Wang, Y., "A novel lncRNA MCM3AP-AS1 promotes the growth of hepato cellular carcinoma by targeting miR-194-5p", FOXA1 axis, 2019, pp.18, 28~
- Yuan, J. H., "A long noncoding RNA activated by TGF-β promotes the invasion-metastasis cascade in hepatocellular carcinoma", Cancer Cell, 25, pp.666~681 (2014)
- Yamashita, A., "Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense mediated mRNA decay", Genes Dev, 15, pp.2215~2228 (2001)
- Okada-Katsuhata, Y., "N-and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5 : SMG-7 during NMD", Nucleic Acids Res, 40, pp.1251~1266 (2012)
- Ohnishi, T., "Phosphorylation of hUPF1 induces formation of mRNA sur veillance complexes containing hSMG-5 and hSMG-7", Mol. Cell, 12, pp.1187~1200 (2003)
- Kurosaki, T., "Quality and quantity control of gene expression by nonsense-mediated mRNA decay", Nat. Rev. Mol. Cell Biol, 20, pp.406~420 (2019)
- Bühler, M., "EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3’ UTR length", Nat. Struct. Mol. Biol, 13, pp.462~464 (2006)
- Park, J., "UPF1", SMG7-dependent microRNA-mediated gene regulation, 2019, pp.10, 4181~
- Hogg, J. R., "Upf1 senses 3’UTR length to potentiate mRNA decay", Cell, 143, pp.379~389 (2010)
- Zünd, D., "Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3’ UTRs", Nat. Struct. Mol. Biol, 20, pp.936~943 (2013)
- Zhou, Y., "UPF1 inhibits the hepatocellular carcinoma progression by tar geting long non-coding RNA UCA1", Sci. Rep, 9, pp.6652~ (2019)
- Li, Y., "Long non-coding RNA SNAI3-AS1 promotes the proliferation and metastasis of hepatocellular carcinoma by regulating the UPF1", Smad7 signalling pathway, 2019, pp.23, 6271~6282
- Lee, S., "UPF1 inhibits hepatocellular carcinoma growth through DUSP1", p53 signal pathway, 2022, pp.10, 793~
- Yang, F., "Long noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humans", Hepatology, 54, pp.1679~1689 (2011)
- Shen, Q., "LncRNA HEIH confers cell sorafenib resistance in hepatocellular carcinoma by regulating miR-98-5p", PI3K, Cancer Manag. Res, pp.2020, 12[DOI]
- Gopalappa, R., "Paired D10A Cas9 nickases are sometimes more efficient than individual nucleases for gene disruption", Nucleic Acids Res, 46, pp.e71~ (2018)
- Chang, L., "The human RNA surveillance factor UPF1 regulates tumorigenesis by targeting Smad7 in hepatocellular carcinoma", J. Exp. Clin. Cancer Res, 35, pp.8~ (2016)
- Li, C., "The C", D box small nucleolar RNA SNORD52 regulated by Upf1 facil itates Hepatocarcinogenesis by stabilizing CDK1, 2020, pp.10, 9348~9363
- Ge, Z., "Polypyrimidine tract binding protein 1 protects mRNAs from recognition by the nonsense-mediated mRNA decay pathway", Elife, 5, pp.e11155~ (2016)
- Colombo, M., "Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6-and SMG7-mediated degradation path ways", Rna, 23, pp.189~201 (2017)
- Imamachi, N., "A GC-rich sequence feature in the 3’ UTR directs UPF1-dependent mRNA decay in mammalian cells", Genome Res, 27, pp.407~418 (2017)
- Durand, S., "Hyperphosphorylation amplifies UPF1 activity to resolve stalls in nonsense-mediated mRNA decay", Nat. Commun, 7, pp.12434~ (2016)
- Cesana, M., "A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA", Cell, 147, pp.358~369 (2011)
- Yuan, J. H., "The MBNL3 splicing factor promotes hepatocellular carcinoma by increasing PXN expression through the alternative splicing of lncRNA-PXN-AS1", Nat. Cell. Biol, 19, pp.820~832 (2017)
- Zhou, W., "The lncRNA H19 mediates breast cancer cell plasticity during EMT and MET plasticity by differentially sponging miR-200b", c and let-7b, 2017, pp.10, eaak9557~
- Statello, L., "Gene regulation by long non-coding RNAs and its biological functions", Nat. Rev. Mol. Cell. Biol, 22, pp.96~118 (2021)
- Quinn, J. J., "Unique features of long non-coding RNA biogenesis and function", Nat. Rev. Genet, 17, pp.47~62 (2016)
- Mas-Ponte, D., "LncATLAS database for subcellular localization of long non coding RNAs", Rna, 23, pp.1080~1087 (2017)
- Rasheed, S. A., "MicroRNA-31 controls G protein alpha-13(GNA13)expression and cell invasion in breast cancer cells", Mol. Cancer, 14, pp.67~ (2015)
- Meigs, T. E., "Interaction of Galpha 12 and Galpha 13 with the cytoplasmic domain of cadherin provides a mechanism for beta-catenin release", Proc. Natl. Acad. Sci. USA, 98, pp.519~524 (2001)
- Rasheed, S. A. K., "GNA13 expression promotes drug resistance and tumor initiating phenotypes in squamous cell cancers", Oncogene, 37, pp.1340~1353 (2018)
- Liu, G., "Potential diagnostic and prognostic marker dimethylglycine dehy drogenase(DMGDH)suppresses hepatocellular carcinoma metastasis in vitro and in vivo", Oncotarget, 7, pp.32607~32616 (2016)
- Li, L., "The human RNA surveillance factor UPF1 modulates gastric cancer progression by targeting long Non-Coding RNA MALAT1", Cell. Physiol. Biochem, 42, pp.2194~2206 (2017)
- Shao, L., "UPF1 regulates the malignant biological behaviors of glioblastoma cells via enhancing the stability of Linc-00313", Cell Death Dis, 10, pp.629~ (2019)
- He, J., "Interaction Between LncRNA and UPF1 in Tumors", Front. Genet, 12, pp.624905~ (2021)
- Zhang, Y., "The m(6)A demethylase ALKBH5-mediated upregulation of DDIT4AS1 maintains pancreatic cancer stemness and suppresses chemosensitivity by activating the mTOR pathway", Mol. Cancer, 21, pp.174~ (2022)
- Fiorini, F., "Human Upf1 is a highly processive RNA helicase and translocase with RNP remodelling activities", Nat. Commun, 6, pp.7581~ (2015)
- Boehm, V., "SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity", Nat. Commun, 12, pp.3965~ (2021)
- Nicholson, P., "Dissecting the functions of SMG5, SMG7, and PNRC2 in nonsense-mediated mRNA decay of human cells", Rna, 24, pp.557~573 (2018)
- Cho, H., "SMG5-PNRC2 is functionally dominant compared with SMG5-SMG7in mammalian nonsense-mediated mRNA decay", Nucleic Acids Res, 41, pp.1319~1328 (2013)
- Fischer, J. W., "Structure-Mediated RNA Decay by UPF1 and G3BP1", Mol. Cell, 78, pp.70~84 (2020)
- Meng, Z., "miR-194 is a marker of hepatic epithelial cells and suppresses metastasis of liver cancer cells in mice", Hepatology, 52, pp.2148~2157 (2010)
- Wang, X., "MicroRNAs as regulators, biomarkers and therapeutic targets in liver diseases", Gut, 70, pp.784~795 (2021)
- Xu, Y., "High expression of GNA13 is associated with poor prognosis in hepatocellular carcinoma", Sci. Rep, 6, pp.35948~ (2016)
- Yagi, H., "A synthetic biology approach reveals a CXCR4-G13-Rho signaling axis driving transendothelial migration of metastatic breast cancer cells", Sci. Signal, 4, pp.ra60~ (2011)
- Zhang, H., "The human RNA surveillance factor Up-frameshift 1inhibits hepatic cancer progression by targeting MRP2", ABCC2, 2017, pp.92, 365~372
