본문 바로가기
KERD
논문KCI 등재

Recognizing Temporal Information in Korean Clinical Narratives through Text Normalization

2

조회

0

다운로드

2

인용

0

참고문헌

키워드

초록

Objectives: Acquiring temporal information is important because knowledge in clinical narratives is time-sensitive. In this paper, we describe an approach that can be used to extract the temporal information found in Korean clinical narrative texts. Methods: We developed a two-stage system, which employs an exhaustive text analysis phase and a temporal expression recognition phase. Since our target document may include tokens that are made up of both Korean and English text joined together, the minimal semantic units are analyzed and then separated from the concatenated phrases and linguistic derivations within a token using a corpus-based approach to decompose complex tokens. A finite state machine is then used on the minimal semantic units in order to find phrases that possess time-related information. Results: In the experiment, the temporal expressions within Korean clinical narratives were extracted using our system. The system performance was evaluated through the use of 100 discharge summaries from Seoul National University Hospital containing a total of 805 temporal expressions. Our system scored a phrase-level precision and recall of 0.895 and 0.919, respectively. Conclusions: Finding information in Korean clinical narrative is challenging task, since the text is written in both Korean and English and frequently omits syntactic elements and word spacing, which makes it extremely noisy. This study presents an effective method that can be used to aquire the temporal information found in Korean clinical documents.

Abstract

Objectives: Acquiring temporal information is important because knowledge in clinical narratives is time-sensitive. In this paper, we describe an approach that can be used to extract the temporal information found in Korean clinical narrative texts. Methods: We developed a two-stage system, which employs an exhaustive text analysis phase and a temporal expression recognition phase. Since our target document may include tokens that are made up of both Korean and English text joined together, the minimal semantic units are analyzed and then separated from the concatenated phrases and linguistic derivations within a token using a corpus-based approach to decompose complex tokens. A finite state machine is then used on the minimal semantic units in order to find phrases that possess time-related information. Results: In the experiment, the temporal expressions within Korean clinical narratives were extracted using our system. The system performance was evaluated through the use of 100 discharge summaries from Seoul National University Hospital containing a total of 805 temporal expressions. Our system scored a phrase-level precision and recall of 0.895 and 0.919, respectively. Conclusions: Finding information in Korean clinical narrative is challenging task, since the text is written in both Korean and English and frequently omits syntactic elements and word spacing, which makes it extremely noisy. This study presents an effective method that can be used to aquire the temporal information found in Korean clinical documents.

참고문헌 (13)

  1. Deshpande AM, "Temporal query of attribute-value patient data: utilizing the constraints of clinical studies", Int J Med Inform, 70, pp.59~77 (2003)
  2. Shahar Y, "Timing is everything. Time-oriented clinical information systems", West J Med, 168, pp.105~113 (1998)
  3. Bui AA, "Automated medical problem list generation: towards a patient timeline", Stud Health Technol Inform, 107(Pt 1), pp.587~591 (2004)
  4. Allen RB, "A focus-context browser for multiple timelines", Proceedings of the 5th ACM, 2005, 260~261
  5. Aliferis CF, "Representing and developing temporally abstracted knowledge as a means towards facilitating time modeling in medical decision-support systems", Comput Biol Med, 27, pp.411~434 (1997)
  6. Verhagen M, "Automating temporal annotation with TARSQI, in Stroudsburg" (2005), Association for Computational Linguistics
  7. Ahn D, "Extracting temporal information from open domain text: a comparative exploration", J Digit Inf Manag, 3, pp.14~20 (2005)
  8. Zhou L, "The evaluation of a temporal reasoning system in processing clinical discharge summaries", J Am Med Inform Assoc, 15, pp.99~106 (2008)
  9. "Korean national corpus in the 21st century Sejong project"[URL]
  10. Stolcke A, "SRILM-an extensible language modeling toolkit", Proceedings of 7th International Conference on Spoken Language Processing (ICSLP), pp.901~990 (2002)
  11. Uzuner O, "Extracting medication information from clinical text", J Am Med Inform Assoc, 17, pp.514~518 (2010)
  12. Hacioglu K, "Automatic time expression labeling for English and Chinese text", CICLing 2005: Sixth International Conference on Intelligent Text Processing and Computational Linguistics, pp.548~559 (2005)
  13. Jang SB, "Automatic TIMEX2 tagging of Korean news", ACM Trans Asian Lang Inf Process, 3, pp.51~65 (2004)

관련 논문AI추천

이 간행물의 다른 논문 (8건)