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분자구조 유사도를 활용한 약물 효능 예측 알고리즘 연구

A Study on the Prediction of Drug Efficacy by Using Molecular Structure

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초록

Drug regeneration technology is an efficient strategy than the existing new drug development process, which requires large costs and time by using drugs that have already been proven safe. In this study, we recognize the importance of the new drug regeneration aspect of new drug development and research in predicting functional similarities through the basic molecular structure that forms drugs. We test four string-based algorithms by using SMILES data and searching for their similarities. And by using the ATC codes, pair them with functional similarities, which we compare and validate to select the optimal model. We confirmed that the higher the molecular structure similarity, the higher the ATC code matching rate. We suggest the possibility of additional potency of random drugs, which can be predicted through data that give information on drugs with high molecular similarities. This model has the advan- tage of being a great combination with additional data, so we look forward to using this model in future research.

Abstract

Drug regeneration technology is an efficient strategy than the existing new drug development process, which requires large costs and time by using drugs that have already been proven safe. In this study, we recognize the importance of the new drug regeneration aspect of new drug development and research in predicting functional similarities through the basic molecular structure that forms drugs. We test four string-based algorithms by using SMILES data and searching for their similarities. And by using the ATC codes, pair them with functional similarities, which we compare and validate to select the optimal model. We confirmed that the higher the molecular structure similarity, the higher the ATC code matching rate. We suggest the possibility of additional potency of random drugs, which can be predicted through data that give information on drugs with high molecular similarities. This model has the advan- tage of being a great combination with additional data, so we look forward to using this model in future research.

참고문헌 (29)

  1. Weininger, "a Chemical Language and Informa-tion-System .1. Introduction to Methodology and Encoding Rules", Journal of Chemical Information and Computer Sci-ences, 28(1), pp.31~36 (1988)
  2. Rajan K, "DECIMER: towards deep learning for chemical image recognition", J Cheminformatics, 1291, pp.1~9 (2020)
  3. Staker J, "Molecular Struc-ture Extraction from Documents Using Deep Learning", Journal of Chemical Information and Modeling, 59(3), pp.1017~1029 (2019)
  4. Oprea T, "Drug repurposing: far beyond new tar-gets for old drugs", The AAPS journal, 14(4), pp.759~763 (2012)
  5. World Health Organization2011WHO Collaborating Centre for Drug Statistics Methodology, "ATC", DDD index 2011, 2011
  6. Gasteiger J, "Chemoinformatics: a textbook" (2006), John Wiley & Sons
  7. Law V, "DrugBank 4.0:shedding new light on drug metabolism", Nucleic Acids Research, 42(D1), pp.1091~1097 (2014)
  8. Marzal A, "Computation of Normalized Edit Distance and Applications", IEEE Transactions on Pattern Analysis and Machine Intelligence, 15(9), pp.926~932 (1993)
  9. Levenshtein V, "Binary codes capable of correcting deletions, insertions, and reversals", Proceedings of the Soviet physics doklady, 707~710 (1966)
  10. Kumar S, "A Linear-Space Algorithm for the Lcs Problem", Acta Informatica, 24(3), pp.353~362 (1987)
  11. Vidal D, "LINGO, an efficient holo-graphic text based method to calculate biophysical properties and intermolecular similarities", Journal of Chemical Information and modeling, 45(2), pp.386~393 (2005)
  12. Öztürk H, "A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction", BMC Bioinformatics, 17(1), pp.1~11 (2016)
  13. Bilenko M, "Adaptive duplicate detection using learnable string similarity measures", Proceedings of the Proceedings of the ninth ACM SIGKDD international confer-ence on Knowledge discovery and data mining, pp.39~48 (2003)
  14. Martin M, "The choice of a gonadotropin-releasing hormone analog influences outcome of in vitro fertilization treatment", American journal of obstetrics and gynecology, 170(6), pp.1629~1634 (1994)
  15. 홍경희, "결명자 에탄올 추출물 및 식이섬유의 이화학적 특성", 한국식품영양학회지, 25(3), pp.612~619 (2012), 한국식품영양학회
  16. Zhou P, "Gin-senoside Rb1 as an Anti-Diabetic Agent and Its Underlying Mechanism Analysis", Cells, 8(3), pp.204~ (2019)
  17. Chiasson J, "The effect of acarbose on insulin sensitivity in subjects with impaired glucose tolerance", Dia-betes Care, 19(11), pp.1190~1193 (1996)
  18. Zhao Q, "Neurotrophic and neurorescue effects of Echinacoside in the subacute MPTP mouse model of Parkinson’s disease", Brain research, 1346, pp.224~236 (2010)
  19. 권희영, "결명자 에탄올 추출물이 알코올로 유도로 유도한 기억 장애에 미치는 영향", 생명과학회지, 29(5), pp.564~569 (2019), 한국생명과학회[DOI]
  20. 남택정, "매생이가 고콜레스테롤 식이 투여 흰쥐의 지질대사에 미치는 영향", 한국식품영양과학회지, 35(6), pp.530~535 (2006), 한국식품영양과학회
  21. Bachrach W, "Ursodeoxycholic acid in the treat-ment of cholesterol cholelithiasis", Digestive diseases and sci-ences, 27(8)), pp.737~761 (1982)
  22. Thompson D, "Pharmacological inhibi-tion of protein tyrosine phosphatase 1B protects against ath-erosclerotic plaque formation in the LDLR-", -mouse model of atherosclerosis, 2017, pp.131(20), 2489~2501
  23. Danzinger R, "Disso-lution of cholesterol gallstones by chenodeoxycholic acid", New England Journal of Medicine, 286(1), pp.1~8 (1972)
  24. Kanes S, "Brexanolone (SAGE-547 injection) in post-partum depression: a randomised controlled trial", Lancet, 390(10093), pp.480~489 (2017)
  25. Eslami G, "Comparison of Rosa Nutkana Sepal Extract with Synthetic Antibiotics for Treatment of Methicillin Resistant Staphylo-coccus Aureus Isolated from Patients with Sty", Archives of Clinical Infectious Diseases, 6, pp.7~11 (2011)
  26. Odou M, "In vitro activity against anaerobes of retapamulin, a new topical antibiotic for treatment of skin infections", Journal of antimicrobial chemo-therapy, 59(4), pp.646~651 (2007)
  27. 박상현, "In Vitro Antimicrobial Activities of Fusidic Acid and Retapamulin against Mupirocin- and Methicillin-Resistant Staphylococcus aureus", Annals of Dermatology, 27(5), pp.551~556 (2015), 대한피부과학회
  28. Hoever G, "Jr. Antiviral activity of gly-cyrrhizic acid derivatives against SARS-coronavirus", Journal of medical chemistry, 48(4), pp.1256~1259 (2005)
  29. Ivorra M, "Hypoglycemic and insulin release effects of tormentic acid: a new hypoglycemic natural prod-uct", Planta Medica, 54(4), pp.282~285 (1988)

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