블루베리 유전체 연구현황 및 전망
Current status and prospects of blueberry genomics research
2
조회
0
다운로드
5
인용
0
참고문헌
키워드
초록
Blueberry (Vaccinium spp.) is a bush that grows well at special cultural environments such as acid soil, high organic matter content, and a good drainage and aeration compared to other general crops. Blueberries are well known to contain high amounts of anthocyanins and phenolic compounds, resulting in high antioxidant activity that provides health benefits, and expanding the cultivation areas and consumer’s demand in the worldwide. However, the full genome of blueberry has not been announced until now. Furthermore, the genomic analysis and transcriptome approaches are not so popular compare to major crops such as orange, apple, and grape. The aim of the review about blueberry genomic research is to establish the platform for setting blueberry breeding target, increasing proficiency of blueberry research, and making the practical cultivation techniques in Korea. The main topics in the blueberry genomic research including transcriptome, genetic mapping, and various markers are related with cold hardiness, chilling requirement, hot tolerance, anthocyanin content, and flavonoid synthesis pathway on various tissues like flower bud, leaf bud, shoot, root, and berry fruit. The review of the current status of blueberry genomic research will provide basic information to the breeders and researchers and will contribute to development of blueberry industry with sustainable productions and increase of blueberry consumption as new profitable crops in Korea.
Abstract
Blueberry (Vaccinium spp.) is a bush that grows well at special cultural environments such as acid soil, high organic matter content, and a good drainage and aeration compared to other general crops. Blueberries are well known to contain high amounts of anthocyanins and phenolic compounds, resulting in high antioxidant activity that provides health benefits, and expanding the cultivation areas and consumer’s demand in the worldwide. However, the full genome of blueberry has not been announced until now. Furthermore, the genomic analysis and transcriptome approaches are not so popular compare to major crops such as orange, apple, and grape. The aim of the review about blueberry genomic research is to establish the platform for setting blueberry breeding target, increasing proficiency of blueberry research, and making the practical cultivation techniques in Korea. The main topics in the blueberry genomic research including transcriptome, genetic mapping, and various markers are related with cold hardiness, chilling requirement, hot tolerance, anthocyanin content, and flavonoid synthesis pathway on various tissues like flower bud, leaf bud, shoot, root, and berry fruit. The review of the current status of blueberry genomic research will provide basic information to the breeders and researchers and will contribute to development of blueberry industry with sustainable productions and increase of blueberry consumption as new profitable crops in Korea.
참고문헌 (34)
- Albert V, "Floral gene resources from basal angiosperms for comparative genomics research", BMC Plant Biol, 5, pp.5~ (2005)
- Arús P, "The peach genome", Tree Genetics Genomes, 8, pp.531~547 (2012)
- Bian Y, "Patterns of simple sequence repeats in cultivated blueberries (Vaccinium section Cyanococcus spp.) and their use in revealing genetic diversity and population structure", Mol Breeding, 34, pp.675~689 (2014)
- Boches PS, "Microsatellite markers for Vaccinium from EST and genomic libraries", Mol Ecol Notes, 5, pp.657~660 (2005)
- Boches P, "Genetic diversity in the highbush blueberry Vaccinium corymbosum L. evaluated with microsatellite markers", J Amer Soc Horti Sci, 131, pp.674~686 (2006)
- Chen L, "Identification and expression analysis of MATE genes involved in flavonoid transport in blueberry plants", PloS ONE, 10(3), pp.e0118578~ (2015)
- Costich DE, "Determination of ploidy level and nuclear DNA content in blueberry by flow cytometry", Theor Appl Genetics, 86, pp.1001~1006 (1993)
- Debnath SC, "Structured diversity using EST-PCR and EST-SSR markers in a set of wild blueberry clones and cultivars", Bioche System Ecol, 54, pp.337~347 (2014)
- Debnath SC, "Bykova NV (2012)Molecular markers and antioxidant activity in berry crops:Genetic diversity analysis", Canadian J Plant Sci, 92, pp.1121~1133 (2012)
- Dhanaraj AL, "Analysis of gene expression associated with cold acclimation in blueberry floral buds using expressed sequence tags", Plant Sci, 166, pp.863~872 (2004)
- Dhanaraj AL, "Major differences observed in transcript profiles of blueberry during cold acclimation under field and cold room conditions", Planta, 225, pp.735~751 (2006)
- Die JV, "Advent of genomics in blueberry", Mol Breeding, 32, pp.493~504 (2013)
- Die JV, "Elucidating cold acclimation pathway in blueberry by transcriptome profiling", Environ Exper Bot, 106, pp.87~98 (2014)
- Graham J, "Breeding plantation tree crops: temperate species", pp.233~248 (2009), Springer
- Gupta V, "RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing", GigaScience, 4, pp.5~ (2015)
- Jaillon O, "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla", Nature, 449, pp.463~467 (2007)
- Li X, "De novo sequencing and comparative analysis of the blueberry transcriptome to discover putative genes related to antioxidants", Gene, 511, pp.54~61 (2012)
- Liu YC, "Exploiting EST databases for the development and characterization of EST-SSR markers in blueberry (Vaccinium)and their cross-species transferability in Vaccinium spp", Sci Hort, 176, pp.319~329 (2014)
- Lobos GA, "Breeding blueberries for a changing global environment: a review", Front Plant Sci, 6, pp.782~ (2015)
- Mudd AB, "Students’ perspective on genomics:from sample to sequence using the case study of blueberry", Front Genet, 4, pp.245~ (2013)
- Qu L, "RAPD-based genetic linkage map of blueberry derived from an interspecific cross between diploid Vaccinium darrowii and tetraploid V. corymbosum", J Amer Soc Horti Sci, 122, pp.69~73 (1997)
- Retamales JB, "Blueberries" (2012), CABI Publishing
- Rowland L, "Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation", BMC Plant Biol, 12, pp.46~ (2012)
- Rowland LJ, "Generating genomic tools for blueberry improvement", Int J Fruit Sci, 12, pp.276~287 (2012)
- Rowland LJ, "EST-PCR markers developed for highbush blueberry are also useful for genetic fingerprinting and relationship studies in rabbiteye blueberry", Sci Hort, 125, pp.779~784 (2010)
- Rowland LJ, "RAPD-based genetic linkage map of blueberry derived from a cross between diploid species (Vaccinium darrowii and V elliottii)", Theor Appl Genetics, 87, pp.863~868 (1994)
- Rowland LJ, "Study of cold tolerance in blueberry using EST libraries, cDNA microarrays and subtractive hybridization", HortScience, 43, pp.1975~1981 (2008)
- Rowland LJ, "Genetics, Genomics and Breeding of Berries", pp.1~40 (2011), Science Publishers
- Rowland LJ, "Identification of molecular markers associated with cold tolerance in blueberry", Acta Hortic, 625, pp.59~69 (2003)
- Rowland LJ, "Construction of a genetic linkage map of an interspecific diploid blueberry population and identification of QTL for chilling requirement and cold hardiness", Mol Breed, 34, pp.2033~2048 (2014)
- Rowland LJ, "Development of EST-PCR markers for DNA fingerprinting and mapping in blueberry (Vaccinium, Section Cyanococcus)", J Amer Soc Horti Sci, 128, pp.682~690 (2003)
- Wei H, "Comparative analysis of expressed sequence tags from cold-acclimated and nonacclimated leaves of Rhododendron catawbiense Michx", Planta, 221, pp.406~416 (2005)
- Zafra-Stone S, "Berry anthocyanins as novel antioxidants in human health and disease prevention", Mol Nutr Food Res, 51, pp.675~683 (2007)
- Zifkin M, "Gene expression and metabolite profiling of developing highbush blueberry fruit indicates transcriptional regulation of flavonoid metabolism and activation of abscisic acid metabolism", Plant Physiol, 158, pp.200~224 (2012)