Crystal Structure of p97 N-D1 Hexamer in Complex with p47 UBX Domain
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The p97 adenosine triphosphatase is a key player in protein homeostasis, responsible for unfolding ubiquitylated substrates. It engages with various adaptor proteins through its N-terminal domain, with the p97-p47 complex attracting particular attention for its involvement in membrane remodeling. Although the structures of p97 in complex with the Ubiquitin regulatory X (UBX) domain from various adaptors have been reported, the stoichiometry is conflicting. Here, we report the crystal structure of the p97 N-D1 hexamer in complex with the p47 UBX domain at a resolution of 2.7 Å. The structure reveals a stoichiometry of 6:6 between the p97 N-D1 and the p47 UBX domain. These findings provide valuable insights into the binding stoichiometry of p97 N-D1 and p47 UBX domain, which are crucial for understanding the role of p97 and adaptor proteins in cellular processes such as the ubiquitin-proteasome pathway, membrane fusion, and cell cycle regulation.
Abstract
The p97 adenosine triphosphatase is a key player in protein homeostasis, responsible for unfolding ubiquitylated substrates. It engages with various adaptor proteins through its N-terminal domain, with the p97-p47 complex attracting particular attention for its involvement in membrane remodeling. Although the structures of p97 in complex with the Ubiquitin regulatory X (UBX) domain from various adaptors have been reported, the stoichiometry is conflicting. Here, we report the crystal structure of the p97 N-D1 hexamer in complex with the p47 UBX domain at a resolution of 2.7 Å. The structure reveals a stoichiometry of 6:6 between the p97 N-D1 and the p47 UBX domain. These findings provide valuable insights into the binding stoichiometry of p97 N-D1 and p47 UBX domain, which are crucial for understanding the role of p97 and adaptor proteins in cellular processes such as the ubiquitin-proteasome pathway, membrane fusion, and cell cycle regulation.
참고문헌 (40)
- Xia, D., "Structure and function of the AAA+ ATPase p97", Cdc48p, 2016, pp.583, 64~
- Meyer, H., "The VCP", p97 system at a glance:connecting cellular function to disease pathogenesis, 2014, pp.127, 3877~
- Erzberger, J. P., "Evolutionary relationships and structural mechanisms of AAA+ proteins", Annu Rev Biophys Biomol Struct, 35, pp.93~ (2006)
- DeLaBarre, B., "Complete structure of p97", valosin-containing protein reveals communication between nucleotide domains, 2003, pp.10, 856~
- Banerjee, S., "2.3 Å resolution cryo-EM structure of human p97 and mechanism of allosteric inhibition", Science, 351, pp.871~ (2016)
- Schuller, J. M., "Nucleotide-dependent conformational changes of the AAA+ ATPase p97 revisited", FEBS Lett, 590, pp.595~ (2016)
- Tang, W. K., "A novel ATP-dependent conformation in p97N-D1 fragment revealed by crystal structures of diseaserelated mutants", EMBO J, 29, pp.2217~ (2010)
- Kondo, H., "p47 is a cofactor for p97-mediated membrane fusion", Nature, 388, pp.75~ (1997)
- Conicella, A. E., "An intrinsically disordered motif regulates the interaction between the p47 adaptor and the p97 AAA+ ATPase", Proc Natl Acad Sci U S A, 117, pp.26226~ (2020)
- Meyer, H. H., "Golgi reassembly after mitosis:the AAA family meets the ubiquitin family", Biochim Biophys Acta, 1744, pp.108~ (2005)
- Hetzer, M., "Distinct AAA-ATPase p97 complexes function in discrete steps of nuclear assembly", Nat Cell Biol, 3, pp.1086~ (2001)
- Roy, L., "Role of p97 and syntaxin 5 in the assembly of transitional endoplasmic reticulum", Mol Biol Cell, 11, pp.2529~ (2000)
- Rabouille, C., "Syntaxin 5 is a common component of the NSF- and p97-mediated reassembly pathways of Golgi cisternae from mitotic Golgi fragments in vitro", Cell, 92, pp.603~ (1998)
- Uchiyama, K, "p97", p47-Mediated biogenesis of Golgi and ER, 2005, pp.137, 115~
- Bodnar, N. O., "Molecular Mechanism of Substrate Processing by the Cdc48 ATPase Complex", Cell, 169, pp.722~ (2017)
- Tang, W. K., "Altered intersubunit communication is the molecular basis for functional defects of pathogenic p97 mutants", J Biol Chem, 288, pp.36624~ (2013)
- Watts, G. D., "Inclusion body myopathy associated with Paget disease of bone and frontotemporal dementia is caused by mutant valosin-containing protein", Nat Genet, 36, pp.377~ (2004)
- Lim, J. J., "Structural insights into the interaction of human p97 N-terminal domain and SHP motif in Derlin-1 rhomboid pseudoprotease", FEBS Lett, 590, pp.4402~ (2016)
- Le, L. T., "Structural Details of Ufd1 Binding to p97 and Their Functional Implications in ER-Associated Degradation", PLoS One, 11, pp.e0163394~ (2016)
- Dreveny, I., "Structural basis of the interaction between the AAA ATPase p97", VCP and its adaptor protein p47, 2004, pp.23, 1030~
- Yuan, X., "Structure, dynamics and interactions of p47, a major adaptor of the AAA ATPase, p97", EMBO J, 23, pp.1463~ (2004)
- Soukenik, M., "The SEP domain of p47 acts as a reversible competitive inhibitor of cathepsin L", FEBS Lett, 576, pp.358~ (2004)
- Yuan, X., "Solution structure and interaction surface of the C-terminal domain from p47: a major p97-cofactor involved in SNARE disassembly", J Mol Biol, 311, pp.255~ (2001)
- Pye, V. E., "Structural insights into the p97-Ufd1-Npl4 complex", Proc Natl Acad Sci U.S.A, 104, pp.467~ (2007)
- Bruderer, R. M., "The AAA ATPase p97", VCP interacts with its alternative co-factors, Ufd1-Npl4and p47, through a common bipartite binding mechanism, 2004, pp.279, 49609~
- Hanzelmann, P., "Characterization of an Additional Binding Surface on the p97 N-Terminal Domain Involved in Bipartite Cofactor Interactions", Structure, 24, pp.140~ (2016)
- Kim, K. H., "Crystal structure of FAF1 UBX domain in complex with p97", VCP N domain reveals a conformational change in the conserved FcisP touch-turn motif of UBX domain, 2011, pp.79, 2583~
- Kim, S. J, "Structural basis for ovarian tumor domain-containing protein 1 (OTU1) binding to p97", valosin-containing protein (VCP), 2014, pp.289, 12264~
- Arumughan, A., "Quantitative interaction mapping reveals an extended UBX domain in ASPL that disrupts functional p97 hexamers", Nat Commun, 7, pp.13047~ (2016)
- Banchenko, S., "Common Mode of Remodeling AAA ATPases p97", CDC48 by Their Disassembling Cofactors ASPL, Structure, pp.2019, 27[DOI]
- Beuron, F., "Conformational changes in the AAA ATPase p97-p47 adaptor complex", EMBO Journal, 25, pp.1967~ (2006)
- Rouiller, I, "A major conformational change in p97 AAA ATPase upon ATP binding", Molecular Cell, 6, pp.1485~ (2000)
- Meyer, H., "Emerging functions of the VCP", p97 AAA-ATPase in the ubiquitin system, 2012, pp.14, 117~
- Ewens, C. A., "The p97-FAF1 protein complex reveals a common mode of p97 adaptor binding", J Biol Chem, 289, pp.12077~ (2014)
- Kang, W., "Crystallization and preliminary X-ray crystallographic analysis of the hexameric human p97", VCP ND1 fragment in complex with the UBX domain of human FAF1, 2011, pp.67, 1199~
- Winn, M. D., "Overview of the CCP4 suite and current developments", Acta Crystallogr D Biol Crystallogr, 67, pp.235~ (2011)
- Emsley, P., "Features and development of Coot", Acta Crystallogr D Biol Crystallogr, 66, pp.486~ (2010)
- Krissinel, E., "CCP4 Cloud for structure determination and project management in macromolecular crystallography", Acta Crystallogr D Struct Biol, 78, pp.1079~ (2022)
- Xu, Y., "Active conformation of the p97-p47 unfoldase complex", Nat Commun, 13, pp.2640~ (2022)
- Adams, P. D., "PHENIX: a comprehensive Python-based system for macromolecular structure solution", Acta Crystallogr D Biol Crystallogr, 66, pp.213~ (2010)
