본문 바로가기
KERD
논문KCI 등재

Network Analysis in Systems Epidemiology

1

조회

0

다운로드

0

인용

0

참고문헌

키워드

초록

Traditional epidemiological studies have identified a number of risk factors for various diseases using regression-based methods that examine the association between an exposure and an outcome (i.e., one-to-one correspondences). One of the major limitations of this approach is the “black-box” aspect of the analysis, in the sense that this approach cannot fully explain complex relationships such as biological pathways. With high-throughput data in current epidemiology, comprehensive analyses are needed. The network approach can help to integrate multi-omics data, visualize their interactions or relationships, and make inferences in the context of biological mechanisms. This review aims to introduce network analysis for systems epidemiology, its procedures, and how to interpret its findings.

Abstract

Traditional epidemiological studies have identified a number of risk factors for various diseases using regression-based methods that examine the association between an exposure and an outcome (i.e., one-to-one correspondences). One of the major limitations of this approach is the “black-box” aspect of the analysis, in the sense that this approach cannot fully explain complex relationships such as biological pathways. With high-throughput data in current epidemiology, comprehensive analyses are needed. The network approach can help to integrate multi-omics data, visualize their interactions or relationships, and make inferences in the context of biological mechanisms. This review aims to introduce network analysis for systems epidemiology, its procedures, and how to interpret its findings.

참고문헌 (31)

  1. Susser M, "Choosing a future for epidemiology: II. From black box to Chinese boxes and eco-epidemiology", Am J Public Health, 86(5), pp.674~677 (1996)
  2. Hu FB, "Metabolic profiling of diabetes : from black-box epidemiology to systems epidemiology", Clin Chem, 57(9), pp.1224~1226 (2011)
  3. Weed DL, "Beyond black box epidemiology", Am J Public Health, 88(1), pp.12~14 (1998)
  4. Laszlo A, "Systems theories and a priori aspects of perception", pp.47~74 (1998), Elsevier
  5. Lund E, "Systems epidemiology in cancer", Cancer Epidemiol Biomarkers Prev, 17(11), pp.2954~2957 (2008)
  6. Haring R, "Diving through the"-omics" : the case for deep phenotyping and systems epidemiology", OMICS, 16(5), pp.231~234 (2012)
  7. Cornelis MC, "Systems epidemiology : a new direction in nutrition and metabolic disease research", Curr Nutr Rep, 2(4), pp.10~ (2013)
  8. Dammann O, "Systems epidemiology: what’s in a name?", Online J Public Health Inform, 6(3), pp.e198~ (2014)
  9. Yan J, "Network approaches to systems biology analysis of complex disease : integrative methods for multi-omics data", Brief Bioinform, 19(6), pp.1370~1381 (2018)
  10. Barabási AL, "Network medicine : a network-based approach to human disease", Nat Rev Genet, 12(1), pp.56~68 (2011)
  11. Hevey D, "Network analysis : a brief overview and tutorial", Health Psychol Behav Med, 6(1), pp.301~328 (2018)
  12. Batushansky A, "Correlation-based network generation, visualization, and analysis as a powerful tool in biological studies: a case study in cancer cell metabolism", Biomed Res Int, 2016, pp.8313272~ (2016)
  13. Epskamp S, "A tutorial on regularized partial correlation networks", Psychol Methods, 23(4), pp.617~634 (2018)
  14. Perez De Souza L, "Network-based strategies in metabolomics data analysis and interpretation : from molecular networking to biological interpretation", Expert Rev Proteomics, 17(4), pp.243~255 (2020)
  15. Kohl M, "Cytoscape : software for visualization and analysis of biological networks", Methods Mol Biol, 696, pp.291~303 (2011)
  16. Kolaczyk ED, "Statistical analysis of network data with R", pp.29~41 (2014), Springer
  17. Epskamp S, "Estimating psychological networks and their accuracy : a tutorial paper", Behav Res Methods, 50(1), pp.195~212 (2018)
  18. Langfelder P, "Fast R functions for robust correlations and hierarchical clustering", J Stat Softw, 46(11), pp.i11~ (2012)
  19. 김성호, "ppcor: An R Package for a Fast Calculation to Semi-partial Correlation Coefficients", Communications for Statistical Applications and Methods, 22(6), pp.665~674 (2015), 한국통계학회
  20. "Package ‘ggraph’" (2021)[URL]
  21. "Package ‘igraph’" (2015)[URL]
  22. Epskamp S, "qgraph : network visualizations of relationships in psychometric data", J Stat Softw, 48(4), pp.1~18 (2012)
  23. "How to plot a graph using Rgraphviz" (2021)[URL]
  24. Riaz MR, "MAPPS : a web-based tool for metabolic pathway prediction and network analysis in the postgenomic era", ACS Synth Biol, 9(5), pp.1069~1082 (2020)
  25. Zhou D, "iMAP : a web server for metabolomics data integrative analysis", Front Chem, 9, pp.659656~ (2021)
  26. Fukushima A, "DiffCorr : an R package to analyze and visualize differential correlations in biological networks", Gene, 518(1), pp.209~214 (2013)
  27. Li Z, "Differential metabolomics analysis allows characterization of diversity of metabolite networks between males and females", PLoS One, 13(11), pp.e0207775~ (2018)
  28. Wang Y, "Metabolomics analysis of human plasma metabolites reveals the age-and sex-specific associations", Liq Chromatogr Relat Technol, 6(5-6), pp.185~194 (2020)
  29. Costello CA, "Differential correlation network analysis identified novel metabolomics signatures for non-responders to total joint replacement in primary osteoarthritis patients", Metabolomics, 16(5), pp.61~ (2020)
  30. Huang T, "A network analysis of biomarkers for type 2 diabetes", Diabetes, 68(2), pp.281~290 (2019)
  31. Floegel A, "Linking diet, physical activity, cardiorespiratory fitness and obesity to serum metabolite networks: findings from a population-based study", Int J Obes (Lond), 38(11), pp.1388~1396 (2014)

관련 논문AI추천

이 간행물의 다른 논문 (8건)