본문 바로가기
KERD
논문KCI 등재

Genetic Diversity Analysis of South and East Asian Duck Populations Using Highly Polymorphic Microsatellite Markers

4

조회

0

다운로드

5

인용

0

참고문헌

키워드

초록

Native duck populations have lower productivity, and have not been developed as much as commercials duck breeds. However, native ducks have more importance in terms of genetic diversity and potentially valuable economic traits. For this reason, population discriminable genetic markers are needed for conservation and development of native ducks. In this study, 24 highly polymorphic microsatellite (MS) markers were investigated using commercial ducks and native East and South Asian ducks. The average polymorphic information content (PIC) value for all MS markers was 0.584, indicating high discrimination power. All populations were discriminated using 14 highly polymorphic MS markers by genetic distance and phylogenetic analysis. The results indicated that there were close genetic relationships among populations. In the structure analysis, East Asian ducks shared more haplotypes with commercial ducks than South Asian ducks, and they had more independent haplotypes than others did. These results will provide useful information for genetic diversity studies in ducks and for the development of duck traceability systems in the market.

Abstract

Native duck populations have lower productivity, and have not been developed as much as commercials duck breeds. However, native ducks have more importance in terms of genetic diversity and potentially valuable economic traits. For this reason, population discriminable genetic markers are needed for conservation and development of native ducks. In this study, 24 highly polymorphic microsatellite (MS) markers were investigated using commercial ducks and native East and South Asian ducks. The average polymorphic information content (PIC) value for all MS markers was 0.584, indicating high discrimination power. All populations were discriminated using 14 highly polymorphic MS markers by genetic distance and phylogenetic analysis. The results indicated that there were close genetic relationships among populations. In the structure analysis, East Asian ducks shared more haplotypes with commercial ducks than South Asian ducks, and they had more independent haplotypes than others did. These results will provide useful information for genetic diversity studies in ducks and for the development of duck traceability systems in the market.

참고문헌 (28)

  1. Alyethodi, R., "Genetic characterization of moti indian native duck using microsatellite markers", J. Appl. Anim. Res, 38, pp.223~227 (2010)
  2. Ayres, K. L., "Api-calc 1.0: A computer program for calculating the average probability of identity allowing for substructure, inbreeding and the presence of close relatives", Mol. Ecol. Notes, 4, pp.315~318 (2004)
  3. Berthouly, C., "Using molecular markers and multivariate methods to study the genetic diversity of local european and Asian chicken breeds", Anim. Genet, 39, pp.121~129 (2008)
  4. Botstein, D., "Construction of a genetic linkage map in man using restriction fragment length polymorphisms", Am. J. Hum. Genet, 32, pp.314~331 (1980)
  5. Dalvit, C., "Genetic traceability of livestock products: A review", Meat Sci, 77, pp.437~449 (2007)
  6. Fulton, J. E., "Poultry genetic resources— operation rescue needed", Science, 300, pp.1667~1668 (2003)
  7. Groenen, M. A. M, "A comprehensive microsatellite linkage map of the chicken genome", Genomics, 49, pp.265~274 (1998)
  8. Groepper, S. R., "Avian influenza virus prevalence in migratory waterfowl in the united states, 2007- 2009", Avian Dis, 58, pp.531~540 (2009)
  9. Hebert, P. D., "Biological identifications through DNA barcodes", Proc. R. Soc. London B: Biol. Sci, 270, pp.313~321 (2003)
  10. Huang, Y., "A genetic and cytogenetic map for the duck (Anas platyrhynchos)", Genetics, 173, pp.287~296 (2006)
  11. Jin, S., "Phylogenetic analysis between domestic and wild duck species in korea using mtdna d-loop sequences", Mol. Biol. Rep, 41, pp.1645~1652 (2014)
  12. Jin, S. D, "Phylogenetic relationships among dabbling duck species in Korea using COI gene variations in mtdna", Japan Poult. Sci, 49, pp.163~170 (2012)
  13. 김학규, "토종오리 육용종의 생산성과 도체수율", 한국가금학회지, 39(1), pp.45~52 (2012), 한국가금학회
  14. Kranis, A, "Development of a high density 600k snp genotyping array for chicken", BMC Genomics, 14, pp.59~ (2013)
  15. Kraus, R. H, "Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)", BMC Genomics, 12, pp.150~ (2011)
  16. Liu, K. J, "Powermarker: An integrated analysis environment for genetic marker analysis", Bioinformatics, 21, pp.2128~2129 (2005)
  17. W. Liu, "Population Structure and Biodiversity of Chinese Indigenous Duck Breeds Revealed by 15 Microsatellite Markers", ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES, 21(3), pp.314~319 (2008), 아세아·태평양축산학회
  18. Maak, S., "Isolation and characterization of 18 microsatellites in the peking duck(Anas platyrhynchos)and their application in other waterfowl species. Mol. Ecol", Notes, 3, pp.224~227 (2003)
  19. Marshall, T. C., "Statistical confidence for likelihood-based paternity inference in natural populations", Mol. Ecol, 7, pp.639~655 (1998)
  20. Ministry for Food, Agriculture, Forestry, "Primary Statistics of Food, Agriculture, Forestry and Fisheries", ~ (2013)
  21. Omland, K. E, "Examining two standard assumptions of ancestral reconstructions: Repeated loss of dichromatism in dabbling ducks (Anatini)", Evolution, 51, pp.1636~1646 (1997)
  22. Pritchard, J. K., "Inference of population structure using multilocus genotype data", Genetics, 155, pp.945~959 (2000)
  23. Ramey, A. M, "Genomic characterization of H14 subtype influenza a viruses in new world waterfowl and experimental infectivity in mallards (Anas platyrhynchos)", Plos One, 9, pp.e95620~ (2014)
  24. Ramos, A. M., "Design of a high density snp genotyping assay in the pig using snps identified and characterized by next generation sequencing technology", Plos One, 4, pp.e6524~ (2009)
  25. 서동원, "한국 토종오리의 개체 식별 및 품종 구분을 위한 Microsatellite 마커 탐색", 한국가금학회지, 42(1), pp.1~8 (2015), 한국가금학회
  26. Stothard, P., "Whole genome resequencing of black angus and holstein cattle for SNP and CNV discovery", BMC Genomics, 12, pp.559~ (2011)
  27. Tadano, R., "Assessing genetic diversity and population structure for commercial chicken lines based on forty microsatellite analyses", Poult. Sci, 86, pp.2301~2308 (2007)
  28. Yinhua, H., "Characterization of 35 novel microsatellite DNA markers from the duck (Anas platyrhynchos) genome and cross-amplification in other birds", Genet. Sel. Evol, 37, pp.455~472 (2005)

관련 논문AI추천

Estimating genetic diversity and population structure of 22 chicken breeds in Asia using microsatellite markers고응규, 노희종, 이준헌, 전다연, Afrin Fahmida, Batsaikhan Solongo, Cho Chang-Yeon, Gorkhali Neena Amatya, Hegay Sergey, Kim Dong-kyo, Kim Kwan-Woo, Kim Seung-Chang, Kongvongxay Siton, Lee Jinwook, Manikku Lakmalie, Susanti Triana, Thao Trinh Thi Thu, Thi Lan Anh Nguyen아세아·태평양축산학회 · Animal Bioscience2020 · 제33권 제12호Monitoring of genetically close Tsaiya duck populations using novel microsatellite markers with high polymorphismEn-Chung Lin, Fang-Yu Lai, Hsiu-Chou Liu, Jeng-Fang Huang, Pei-Hwa Wang, Shih-Torng Ding, Yi-Chen Chen, Yi-Yinhg Chang아세아·태평양축산학회 · Animal Bioscience2020 · 제33권 제6호Genetic diversity analysis of fourteen geese breeds based on microsatellite genotyping techniqueAlwasella Abdallah, Guohong Chen, Hebatallah Abdel Moniem, Yang Yao Zong아세아·태평양축산학회 · Animal Bioscience2019 · 제32권 제11호Discrimination of Korean Native Chicken Lines Using Fifteen Selected Microsatellite Markers서동원, 이준헌, 최누리, B.S. Kang, C. Jo, H.B. Park, H. Sultana, H.T. Lim, K.N. Heo, M. R. Hoque, S.H. Lee아세아·태평양축산학회 · Animal Bioscience2013 · 제26권 제3호Assessment of genetic diversity and phylogenetic relationships of Korean native chicken breeds using microsatellite markers공홍식, 서주희, 이준헌아세아·태평양축산학회 · Animal Bioscience2017 · 제30권 제10호ISAG-recommended Microsatellite Marker Analysis Among Five Korean Native Chicken Lines강보석, 박희복, 서동원, 이준헌, 임현태, 조철훈, 최누리, 허강녕, Hasina Sultana, Md. Rashedul Hoque한국축산학회 · 한국축산학회지2012 · 제54권 제6호

이 간행물의 다른 논문 (6건)